High-Throughput Sequencing, a Versatile Weapon to Support Genome-Based Diagnosis in Infectious Diseases: Applications to Clinical Bacteriology

por Caboche, Ségolène, Audebert, Christophe, Hot, David
Publicado 2014

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data

por Caboche, Ségolène, Audebert, Christophe, Lemoine, Yves, Hot, David
Publicado 2014

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data

por Caboche, Ségolène, Even, Gaël, Loywick, Alexandre, Audebert, Christophe, Hot, David
Publicado 2017

Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics

por Siegwald, Léa, Touzet, Hélène, Lemoine, Yves, Hot, David, Audebert, Christophe, Caboche, Ségolène
Publicado 2017

Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization

por Siegwald, Léa, Audebert, Christophe, Even, Gaël, Viscogliosi, Eric, Caboche, Ségolène, Chabé, Magali
Publicado 2017

The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical “Microscope” Affect the Biological Interpretation?

por Siegwald, Léa, Caboche, Ségolène, Even, Gaël, Viscogliosi, Eric, Audebert, Christophe, Chabé, Magali
Publicado 2019

Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota

por Audebert, Christophe, Even, Gaël, Cian, Amandine, Loywick, Alexandre, Merlin, Sophie, Viscogliosi, Eric, Chabé, Magali
Publicado 2016

Changes in the Human Gut Microbiota Associated With Colonization by Blastocystis sp. and Entamoeba spp. in Non-Industrialized Populations

por Even, Gaël, Lokmer, Ana, Rodrigues, Jules, Audebert, Christophe, Viscogliosi, Eric, Ségurel, Laure, Chabé, Magali
Publicado 2021

A multiplex serological assay for the characterization of IgG immune response to SARS-CoV-2

por Brochot, Etienne, Souplet, Vianney, Follet, Pauline, Ponthieu, Pauline, Olivier, Christophe, Even, Gaël, Audebert, Christophe, Malbec, Rémi
Publicado 2022

Bact-to-Batch: A Microbiota-Based Tool to Determine Optimal Animal Allocation in Experimental Designs

por Even, Gaël, Mouray, Anthony, Vandenabeele, Nicolas, Martel, Sophie, Merlin, Sophie, Lebrun-Ruer, Ségolène, Chabé, Magali, Audebert, Christophe
Publicado 2023

Effects of Propidium Monoazide (PMA) Treatment on Mycobiome and Bacteriome Analysis of Cystic Fibrosis Airways during Exacerbation

por Nguyen, Linh Do Ngoc, Deschaght, Pieter, Merlin, Sophie, Loywick, Alexandre, Audebert, Christophe, Van Daele, Sabine, Viscogliosi, Eric, Vaneechoutte, Mario, Delhaes, Laurence
Publicado 2016

Agrodiag PorCoV: A multiplex immunoassay for the differential diagnosis of porcine enteric coronaviruses

por Malbec, Rémi, Kimpston-Burkgren, Kay, Vandenkoornhuyse, Elisa, Olivier, Christophe, Souplet, Vianney, Audebert, Christophe, Carrillo-Ávila, Jose Antonio, Baum, David, Giménez-Lirola, Luis
Publicado 2020

The Formation of Glycan-Specific Natural Antibodies Repertoire in GalT-KO Mice Is Determined by Gut Microbiota

por Bello-Gil, Daniel, Audebert, Christophe, Olivera-Ardid, Sara, Pérez-Cruz, Magdiel, Even, Gaël, Khasbiullina, Nailya, Gantois, Nausicaa, Shilova, Nadezhda, Merlin, Sophie, Costa, Cristina, Bovin, Nicolai, Mañez, Rafael
Publicado 2019

Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates

por Audebert, Christophe, Bonardi, Franck, Caboche, Ségolène, Guyot, Karine, Touzet, Hélène, Merlin, Sophie, Gantois, Nausicaa, Creusy, Colette, Meloni, Dionigia, Mouray, Anthony, Viscogliosi, Eric, Certad, Gabriela, Benamrouz-Vanneste, Sadia, Chabé, Magali
Publicado 2020

Cryptosporidium parvum-induced ileo-caecal adenocarcinoma and Wnt signaling in a mouse model

por Benamrouz, Sadia, Conseil, Valerie, Chabé, Magali, Praet, Marleen, Audebert, Christophe, Blervaque, Renaud, Guyot, Karine, Gazzola, Sophie, Mouray, Anthony, Chassat, Thierry, Delaire, Baptiste, Goetinck, Nathalie, Gantois, Nausicaa, Osman, Marwan, Slomianny, Christian, Dehennaut, Vanessa, Lefebvre, Tony, Viscogliosi, Eric, Cuvelier, Claude, Dei-Cas, Eduardo, Creusy, Colette, Certad, Gabriela
Publicado 2014