The sensitivity of transcriptomics BMD modeling to the methods used for microarray data normalization

por Mezencev, Roman, Auerbach, Scott S.
Publicado 2020

A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples

por Bushel, Pierre R., Paules, Richard S., Auerbach, Scott S.
Publicado 2018

Crosstalk between Receptor and Non-receptor Mediated Chemical Modes of Action in Rat Livers Converges through a Dysregulated Gene Expression Network at Tumor Suppressor Tp53

por Funderburk, Karen M., Auerbach, Scott S., Bushel, Pierre R.
Publicado 2017

Biological Networks for Predicting Chemical Hepatocarcinogenicity Using Gene Expression Data from Treated Mice and Relevance across Human and Rat Species

por Thomas, Reuben, Thomas, Russell S., Auerbach, Scott S., Portier, Christopher J.
Publicado 2013

Clinical review: Alternative vascular access techniques for continuous hemofiltration

por DiCarlo, Joseph V, Auerbach, Scott R, Alexander, Steven R
Publicado 2006

Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data

por Bushel, Pierre R., Ferguson, Stephen S., Ramaiahgari, Sreenivasa C., Paules, Richard S., Auerbach, Scott S.
Publicado 2020

Ranking the synthesizability of hypothetical zeolites with the sorting hat

por Helfrecht, Benjamin A., Pireddu, Giovanni, Semino, Rocio, Auerbach, Scott M., Ceriotti, Michele
Publicado 2022

Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites

por Stoner, Matthew A., Auerbach, Scott S., Zamule, Stephanie M., Strom, Stephen C., Omiecinski, Curtis J.
Publicado 2007

Genomic Models of Short-Term Exposure Accurately Predict Long-Term Chemical Carcinogenicity and Identify Putative Mechanisms of Action

por Gusenleitner, Daniel, Auerbach, Scott S., Melia, Tisha, Gómez, Harold F., Sherr, David H., Monti, Stefano
Publicado 2014

Tox21Enricher-Shiny: an R Shiny application for toxicity functional annotation analysis

por Combs, Parker, Erickson, Jeremy, Hsieh, Jui-Hua, Guo, Kai, Nolte, Sue, Schmitt, Charles, Auerbach, Scott, Hur, Junguk
Publicado 2023

Corrigendum: Tox21Enricher-Shiny: an R Shiny application for toxicity functional annotation analysis

por Combs, Parker, Erickson, Jeremy, Hsieh, Jui-Hua, Guo, Kai, Nolte, Sue, Schmitt, Charles, Auerbach, Scott, Hur, Junguk
Publicado 2023

RNA-Seq Profiling Reveals Novel Hepatic Gene Expression Pattern in Aflatoxin B1 Treated Rats

por Merrick, B. Alex, Phadke, Dhiral P., Auerbach, Scott S., Mav, Deepak, Stiegelmeyer, Suzy M., Shah, Ruchir R., Tice, Raymond R.
Publicado 2013

The Carcinogenome Project: In Vitro Gene Expression Profiling of Chemical Perturbations to Predict Long-Term Carcinogenicity

por Li, Amy, Lu, Xiaodong, Natoli, Ted, Bittker, Joshua, Sipes, Nisha S., Subramanian, Aravind, Auerbach, Scott, Sherr, David H., Monti, Stefano
Publicado 2019

Real-time cell toxicity profiling of Tox21 10K compounds reveals cytotoxicity dependent toxicity pathway linkage

por Hsieh, Jui-Hua, Huang, Ruili, Lin, Ja-An, Sedykh, Alexander, Zhao, Jinghua, Tice, Raymond R., Paules, Richard S., Xia, Menghang, Auerbach, Scott S.
Publicado 2017

Correction: Real-time cell toxicity profiling of Tox21 10K compounds reveals cytotoxicity dependent toxicity pathway linkage

por Hsieh, Jui-Hua, Huang, Ruili, Lin, Ja-An, Sedykh, Alexander, Zhao, Jinghua, Tice, Raymond R., Paules, Richard S., Xia, Menghang, Auerbach, Scott S.
Publicado 2017

Computational models identify several FDA approved or experimental drugs as putative agents against SARS-CoV-2

por Bobrowski, Tesia, Alves, Vinicius M., Melo-Filho, Cleber C., Korn, Daniel, Auerbach, Scott, Schmitt, Charles, Muratov, Eugene N., Tropsha, Alexander
Publicado 2020

Transcriptomic profiling of rat liver samples in a comprehensive study design by RNA-Seq

por Gong, Binsheng, Wang, Charles, Su, Zhenqiang, Hong, Huixiao, Thierry-Mieg, Jean, Thierry-Mieg, Danielle, Shi, Leming, Auerbach, Scott S., Tong, Weida, Xu, Joshua
Publicado 2014

The Importance of the Biological Impact of Exposure to the Concept of the Exposome

por Dennis, Kristine K., Auerbach, Scott S., Balshaw, David M., Cui, Yuxia, Fallin, Margaret Daniele, Smith, Martyn T., Spira, Avrum, Sumner, Susan, Miller, Gary W.
Publicado 2016

Identifying Attributes That Influence In Vitro-to-In Vivo Concordance by Comparing In Vitro Tox21 Bioactivity Versus In Vivo DrugMatrix Transcriptomic Responses Across 130 Chemical...

por Klaren, William D, Ring, Caroline, Harris, Mark A, Thompson, Chad M, Borghoff, Susan, Sipes, Nisha S, Hsieh, Jui-Hua, Auerbach, Scott S, Rager, Julia E
Publicado 2019

Predictive modeling of biological responses in the rat liver using in vitro Tox21 bioactivity: Benefits from high-throughput toxicokinetics

por Ring, Caroline, Sipes, Nisha S., Hsieh, Jui-Hua, Carberry, Celeste, Koval, Lauren E., Klaren, William D., Harris, Mark A., Auerbach, Scott S., Rager, Julia E.
Publicado 2021