A Benchmark of Genetic Variant Calling Pipelines Using Metagenomic Short-Read Sequencing

por Andreu-Sánchez, Sergio, Chen, Lianmin, Wang, Daoming, Augustijn, Hannah E., Zhernakova, Alexandra, Fu, Jingyuan
Publicado 2021

BiG-MAP: an Automated Pipeline To Profile Metabolic Gene Cluster Abundance and Expression in Microbiomes

por Pascal Andreu, Victória, Augustijn, Hannah E., van den Berg, Koen, van der Hooft, Justin J. J., Fischbach, Michael A., Medema, Marnix H.
Publicado 2021

antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation

por Blin, Kai, Shaw, Simon, Augustijn, Hannah E, Reitz, Zachary L, Biermann, Friederike, Alanjary, Mohammad, Fetter, Artem, Terlouw, Barbara R, Metcalf, William W, Helfrich, Eric J N, van Wezel, Gilles P, Medema, Marnix H, Weber, Tilmann
Publicado 2023

Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome

por Chen, Lianmin, Zhernakova, Daria V., Kurilshikov, Alexander, Andreu-Sánchez, Sergio, Wang, Daoming, Augustijn, Hannah E., Vich Vila, Arnau, Weersma, Rinse K., Medema, Marnix H., Netea, Mihai G., Kuipers, Folkert, Wijmenga, Cisca, Zhernakova, Alexandra, Fu, Jingyuan
Publicado 2022

Faecal metabolome and its determinants in inflammatory bowel disease

por Vich Vila, Arnau, Hu, Shixian, Andreu-Sánchez, Sergio, Collij, Valerie, Jansen, Bernadien H, Augustijn, Hannah E, Bolte, Laura A, Ruigrok, Renate A A A, Abu-Ali, Galeb, Giallourakis, Cosmas, Schneider, Jessica, Parkinson, John, Al-Garawi, Amal, Zhernakova, Alexandra, Gacesa, Ranko, Fu, Jingyuan, Weersma, Rinse K
Publicado 2023

MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

por Terlouw, Barbara R, Blin, Kai, Navarro-Muñoz, Jorge C, Avalon, Nicole E, Chevrette, Marc G, Egbert, Susan, Lee, Sanghoon, Meijer, David, Recchia, Michael J J, Reitz, Zachary L, van Santen, Jeffrey A, Selem-Mojica, Nelly, Tørring, Thomas, Zaroubi, Liana, Alanjary, Mohammad, Aleti, Gajender, Aguilar, César, Al-Salihi, Suhad A A, Augustijn, Hannah E, Avelar-Rivas, J Abraham, Avitia-Domínguez, Luis A, Barona-Gómez, Francisco, Bernaldo-Agüero, Jordan, Bielinski, Vincent A, Biermann, Friederike, Booth, Thomas J, Carrion Bravo, Victor J, Castelo-Branco, Raquel, Chagas, Fernanda O, Cruz-Morales, Pablo, Du, Chao, Duncan, Katherine R, Gavriilidou, Athina, Gayrard, Damien, Gutiérrez-García, Karina, Haslinger, Kristina, Helfrich, Eric J N, van der Hooft, Justin J J, Jati, Afif P, Kalkreuter, Edward, Kalyvas, Nikolaos, Kang, Kyo Bin, Kautsar, Satria, Kim, Wonyong, Kunjapur, Aditya M, Li, Yong-Xin, Lin, Geng-Min, Loureiro, Catarina, Louwen, Joris J R, Louwen, Nico L L, Lund, George, Parra, Jonathan, Philmus, Benjamin, Pourmohsenin, Bita, Pronk, Lotte J U, Rego, Adriana, Rex, Devasahayam Arokia Balaya, Robinson, Serina, Rosas-Becerra, L Rodrigo, Roxborough, Eve T, Schorn, Michelle A, Scobie, Darren J, Singh, Kumar Saurabh, Sokolova, Nika, Tang, Xiaoyu, Udwary, Daniel, Vigneshwari, Aruna, Vind, Kristiina, Vromans, Sophie P J M, Waschulin, Valentin, Williams, Sam E, Winter, Jaclyn M, Witte, Thomas E, Xie, Huali, Yang, Dong, Yu, Jingwei, Zdouc, Mitja, Zhong, Zheng, Collemare, Jérôme, Linington, Roger G, Weber, Tilmann, Medema, Marnix H
Publicado 2022