Query3d: a new method for high-throughput analysis of functional residues in protein structures

por Ausiello, Gabriele, Via, Allegra, Helmer-Citterich, Manuela
Publicado 2005

Superpose3D: A Local Structural Comparison Program That Allows for User-Defined Structure Representations

por Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2010

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

por Ferrè, Fabrizio, Ausiello, Gabriele, Zanzoni, Andreas, Helmer-Citterich, Manuela
Publicado 2005

A neural strategy for the inference of SH3 domain-peptide interaction specificity

por Ferraro, Enrico, Via, Allegra, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2005

Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites

por Ausiello, Gabriele, Peluso, Daniele, Via, Allegra, Helmer-Citterich, Manuela
Publicado 2007

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

por Parca, Luca, Ferré, Fabrizio, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2013

A novel approach to represent and compare RNA secondary structures

por Mattei, Eugenio, Ausiello, Gabriele, Ferrè, Fabrizio, Helmer-Citterich, Manuela
Publicado 2014

Phosphate binding sites identification in protein structures

por Parca, Luca, Gherardini, Pier Federico, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2011

Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

por Bianchi, Valerio, Gherardini, Pier Federico, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2012

pdbFun: mass selection and fast comparison of annotated PDB residues

por Ausiello, Gabriele, Zanzoni, Andreas, Peluso, Daniele, Via, Allegra, Helmer-Citterich, Manuela
Publicado 2005

SH3-Hunter: discovery of SH3 domain interaction sites in proteins

por Ferraro, Enrico, Peluso, Daniele, Via, Allegra, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2007

Modular architecture of nucleotide-binding pockets

por Gherardini, Pier Federico, Ausiello, Gabriele, Russell, Robert B., Helmer-Citterich, Manuela
Publicado 2010

webPDBinder: a server for the identification of ligand binding sites on protein structures

por Bianchi, Valerio, Mangone, Iolanda, Ferrè, Fabrizio, Helmer-Citterich, Manuela, Ausiello, Gabriele
Publicado 2013

Variation in the co-expression profile highlights a loss of miRNA-mRNA regulation in multiple cancer types

por Pepe, Gerardo, Parca, Luca, Viviani, Lorenzo, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2022

Phospho3D: a database of three-dimensional structures of protein phosphorylation sites

por Zanzoni, Andreas, Ausiello, Gabriele, Via, Allegra, Gherardini, Pier Federico, Helmer-Citterich, Manuela
Publicado 2007

Structural motifs recurring in different folds recognize the same ligand fragments

por Ausiello, Gabriele, Gherardini, Pier Federico, Gatti, Elena, Incani, Ottaviano, Helmer-Citterich, Manuela
Publicado 2009

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

por Parca, Luca, Mangone, Iolanda, Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela
Publicado 2011

A Proteome-wide Domain-centric Perspective on Protein Phosphorylation

por Palmeri, Antonio, Ausiello, Gabriele, Ferrè, Fabrizio, Helmer-Citterich, Manuela, Gherardini, Pier Federico
Publicado 2014

Revisiting the “satisfaction of spatial restraints” approach of MODELLER for protein homology modeling

por Janson, Giacomo, Grottesi, Alessandro, Pietrosanto, Marco, Ausiello, Gabriele, Guarguaglini, Giulia, Paiardini, Alessandro
Publicado 2019

Development of Computational Tools for the Inference of Protein Interaction Specificity Rules and Functional Annotation Using Structural Information

por Ferrè, Fabrizio, Via, Allegra, Ausiello, Gabriele, Brannetti, Barbara, Zanzoni, Andreas, Helmer-Citterich, Manuela
Publicado 2003