Predicting mean ribosome load for 5’UTR of any length using deep learning

por Karollus, Alexander, Avsec, Žiga, Gagneur, Julien
Publicado 2021

Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks

por Avsec, Žiga, Barekatain, Mohammadamin, Cheng, Jun, Gagneur, Julien
Publicado 2018

Cis-regulatory elements explain most of the mRNA stability variation across genes in yeast

por Cheng, Jun, Maier, Kerstin C., Avsec, Žiga, Rus, Petra, Gagneur, Julien
Publicado 2017

MMSplice: modular modeling improves the predictions of genetic variant effects on splicing

por Cheng, Jun, Nguyen, Thi Yen Duong, Cygan, Kamil J., Çelik, Muhammed Hasan, Fairbrother, William G., Avsec, žiga, Gagneur, Julien
Publicado 2019

Base-resolution models of transcription factor binding reveal soft motif syntax

por Avsec, Žiga, Weilert, Melanie, Shrikumar, Avanti, Krueger, Sabrina, Alexandari, Amr, Dalal, Khyati, Fropf, Robin, McAnany, Charles, Gagneur, Julien, Kundaje, Anshul, Zeitlinger, Julia
Publicado 2021

Effective gene expression prediction from sequence by integrating long-range interactions

por Avsec, Žiga, Agarwal, Vikram, Visentin, Daniel, Ledsam, Joseph R., Grabska-Barwinska, Agnieszka, Taylor, Kyle R., Assael, Yannis, Jumper, John, Kohli, Pushmeet, Kelley, David R.
Publicado 2021

The Kipoi repository accelerates community exchange and reuse of predictive models for genomics

por Avsec, Žiga, Kreuzhuber, Roman, Israeli, Johnny, Xu, Nancy, Cheng, Jun, Shrikumar, Avanti, Banerjee, Abhimanyu, Kim, Daniel S., Beier, Thorsten, Urban, Lara, Kundaje, Anshul, Stegle, Oliver, Gagneur, Julien
Publicado 2019

Mapping single-cell data to reference atlases by transfer learning

por Lotfollahi, Mohammad, Naghipourfar, Mohsen, Luecken, Malte D., Khajavi, Matin, Büttner, Maren, Wagenstetter, Marco, Avsec, Žiga, Gayoso, Adam, Yosef, Nir, Interlandi, Marta, Rybakov, Sergei, Misharin, Alexander V., Theis, Fabian J.
Publicado 2021

Mutations in MDH2, Encoding a Krebs Cycle Enzyme, Cause Early-Onset Severe Encephalopathy

por Ait-El-Mkadem, Samira, Dayem-Quere, Manal, Gusic, Mirjana, Chaussenot, Annabelle, Bannwarth, Sylvie, François, Bérengère, Genin, Emmanuelle C., Fragaki, Konstantina, Volker-Touw, Catharina L.M., Vasnier, Christelle, Serre, Valérie, van Gassen, Koen L.I., Lespinasse, Françoise, Richter, Susan, Eisenhofer, Graeme, Rouzier, Cécile, Mochel, Fanny, De Saint-Martin, Anne, Abi Warde, Marie-Thérèse, de Sain-van der Velde, Monique G.M., Jans, Judith J.M., Amiel, Jeanne, Avsec, Ziga, Mertes, Christian, Haack, Tobias B., Strom, Tim, Meitinger, Thomas, Bonnen, Penelope E., Taylor, Robert W., Gagneur, Julien, van Hasselt, Peter M., Rötig, Agnès, Delahodde, Agnès, Prokisch, Holger, Fuchs, Sabine A., Paquis-Flucklinger, Véronique
Publicado 2017