The genomic landscape of prostate cancer

por Baca, Sylvan C., Garraway, Levi A.
Publicado 2012

Utilizing Electronic Health Records (EHR) and Tumor Panel Sequencing to Demystify Prognosis of Cancer of Unknown Primary (CUP) patients

por Moon, Intae, LoPiccolo, Jaclyn, Baca, Sylvan C., Sholl, Lynette M., Kehl, Kenneth L., Hassett, Michael J., Liu, David, Schrag, Deborah, Gusev, Alexander
Publicado 2023

Qualifiers of atypia in the cytologic diagnosis of thyroid nodules are associated with different Afirma gene expression classifier results and clinical outcomes

por Baca, Sylvan C., Wong, Kristine S., Strickland, Kyle C., Heller, Howard T., Kim, Matthew I., Barletta, Justine A., Cibas, Edmund S., Krane, Jeffrey F., Marqusee, Ellen, Angell, Trevor E.
Publicado 2017

ASCL1 activates neuronal stem cell-like lineage programming through remodeling of the chromatin landscape in prostate cancer

por Nouruzi, Shaghayegh, Ganguli, Dwaipayan, Tabrizian, Nakisa, Kobelev, Maxim, Sivak, Olena, Namekawa, Takeshi, Thaper, Daksh, Baca, Sylvan C., Freedman, Matthew L., Aguda, Adeleke, Davies, Alastair, Zoubeidi, Amina
Publicado 2022

Unraveling the clonal hierarchy of somatic genomic aberrations

por Prandi, Davide, Baca, Sylvan C, Romanel, Alessandro, Barbieri, Christopher E, Mosquera, Juan-Miguel, Fontugne, Jacqueline, Beltran, Himisha, Sboner, Andrea, Garraway, Levi A, Rubin, Mark A, Demichelis, Francesca
Publicado 2014

Erratum to: Unraveling the clonal hierarchy of somatic genomic aberrations

por Prandi, Davide, Baca, Sylvan C., Romanel, Alessandro, Barbieri, Christopher E., Mosquera, Juan-Miguel, Fontugne, Jacqueline, Beltran, Himisha, Sboner, Andrea, Garraway, Levi A., Rubin, Mark A., Demichelis, Francesca
Publicado 2017

Optimized high-throughput screening of non-coding variants identified from genome-wide association studies

por Morova, Tunc, Ding, Yi, Huang, Chia-Chi F, Sar, Funda, Schwarz, Tommer, Giambartolomei, Claudia, Baca, Sylvan C, Grishin, Dennis, Hach, Faraz, Gusev, Alexander, Freedman, Matthew L, Pasaniuc, Bogdan, Lack, Nathan A
Publicado 2022

Integrative molecular analyses define correlates of high B7-H3 expression in metastatic castrate-resistant prostate cancer

por Shi, Xiaolei, Day, Abderrahman, Bergom, Hannah E., Tape, Sydney, Baca, Sylvan C., Sychev, Zoi E., Larson, Gabrianne, Bozicevich, Asha, Drake, Justin M., Zorko, Nicholas, Wang, Jinhua, Ryan, Charles J., Antonarakis, Emmanuel S., Hwang, Justin
Publicado 2022

HOXB13 suppresses de novo lipogenesis through HDAC3-mediated epigenetic reprogramming in prostate cancer

por Lu, Xiaodong, Fong, Ka-wing, Gritsina, Galina, Wang, Fang, Baca, Sylvan C., Brea, Lourdes T., Berchuck, Jacob E., Spisak, Sandor, Ross, Jenny, Morrissey, Colm, Corey, Eva, Chandel, Navdeep S., Catalona, William J., Yang, Ximing, Freedman, Matthew L., Zhao, Jonathan C., Yu, Jindan
Publicado 2022

CREB5 reprograms FOXA1 nuclear interactions to promote resistance to androgen receptor-targeting therapies

por Hwang, Justin H, Arafeh, Rand, Seo, Ji-Heui, Baca, Sylvan C, Ludwig, Megan, Arnoff, Taylor E, Sawyer, Lydia, Richter, Camden, Tape, Sydney, Bergom, Hannah E, McSweeney, Sean, Rennhack, Jonathan P, Klingenberg, Sarah A, Cheung, Alexander TM, Kwon, Jason, So, Jonathan, Kregel, Steven, Van Allen, Eliezer M, Drake, Justin M, Freedman, Matthew L, Hahn, William C
Publicado 2022

Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential

por Kneppers, Jeroen, Severson, Tesa M., Siefert, Joseph C., Schol, Pieter, Joosten, Stacey E. P., Yu, Ivan Pak Lok, Huang, Chia-Chi Flora, Morova, Tunç, Altıntaş, Umut Berkay, Giambartolomei, Claudia, Seo, Ji-Heui, Baca, Sylvan C., Carneiro, Isa, Emberly, Eldon, Pasaniuc, Bogdan, Jerónimo, Carmen, Henrique, Rui, Freedman, Matthew L., Wessels, Lodewyk F. A., Lack, Nathan A., Bergman, Andries M., Zwart, Wilbert
Publicado 2022

The Prostate Cancer Androgen Receptor Cistrome in African American Men Associates with Upregulation of Lipid Metabolism and Immune Response

por Berchuck, Jacob E., Adib, Elio, Abou Alaiwi, Sarah, Dash, Amit K., Shin, Jin Na, Lowder, Dallin, McColl, Collin, Castro, Patricia, Carelli, Ryan, Benedetti, Elisa, Deng, Jenny, Robertson, Matthew, Baca, Sylvan C., Bell, Connor, McClure, Heather M., El Zarif, Talal, Davidsohn, Matthew P., Lakshminarayanan, Gitanjali, Rizwan, Kinza, Skapura, Darlene G., Grimm, Sandra L., Davis, Christel M., Ehli, Erik A., Kelleher, Kaitlin M., Seo, Ji-Heui, Mitsiades, Nicholas, Coarfa, Cristian, Pomerantz, Mark M., Loda, Massimo, Ittmann, Michael, Freedman, Matthew L., Kaochar, Salma
Publicado 2022

Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes

por De Sarkar, Navonil, Patton, Robert D., Doebley, Anna-Lisa, Hanratty, Brian, Adil, Mohamed, Kreitzman, Adam J., Sarthy, Jay F., Ko, Minjeong, Brahma, Sandipan, Meers, Michael P., Janssens, Derek H., Ang, Lisa S., Coleman, Ilsa M., Bose, Arnab, Dumpit, Ruth F., Lucas, Jared M., Nunez, Talina A., Nguyen, Holly M., McClure, Heather M., Pritchard, Colin C., Schweizer, Michael T., Morrissey, Colm, Choudhury, Atish D., Baca, Sylvan C., Berchuck, Jacob E., Freedman, Matthew L., Ahmad, Kami, Haffner, Michael C., Montgomery, R. Bruce, Corey, Eva, Henikoff, Steven, Nelson, Peter S., Ha, Gavin
Publicado 2023

Epigenomic charting and functional annotation of risk loci in renal cell carcinoma

por Nassar, Amin H., Abou Alaiwi, Sarah, Baca, Sylvan C., Adib, Elio, Corona, Rosario I., Seo, Ji-Heui, Fonseca, Marcos A. S., Spisak, Sandor, El Zarif, Talal, Tisza, Viktoria, Braun, David A., Du, Heng, He, Monica, Flaifel, Abdallah, Alchoueiry, Michel, Denize, Thomas, Matar, Sayed G., Acosta, Andres, Shukla, Sachet, Hou, Yue, Steinharter, John, Bouchard, Gabrielle, Berchuck, Jacob E., O’Connor, Edward, Bell, Connor, Nuzzo, Pier Vitale, Mary Lee, Gwo-Shu, Signoretti, Sabina, Hirsch, Michelle S., Pomerantz, Mark, Henske, Elizabeth, Gusev, Alexander, Lawrenson, Kate, Choueiri, Toni K., Kwiatkowski, David J., Freedman, Matthew L.
Publicado 2023

Reprogramming of the FOXA1 cistrome in treatment-emergent neuroendocrine prostate cancer

por Baca, Sylvan C., Takeda, David Y., Seo, Ji-Heui, Hwang, Justin, Ku, Sheng Yu, Arafeh, Rand, Arnoff, Taylor, Agarwal, Supreet, Bell, Connor, O’Connor, Edward, Qiu, Xintao, Alaiwi, Sarah Abou, Corona, Rosario I., Fonseca, Marcos A. S., Giambartolomei, Claudia, Cejas, Paloma, Lim, Klothilda, He, Monica, Sheahan, Anjali, Nassar, Amin, Berchuck, Jacob E., Brown, Lisha, Nguyen, Holly M., Coleman, Ilsa M., Kaipainen, Arja, De Sarkar, Navonil, Nelson, Peter S., Morrissey, Colm, Korthauer, Keegan, Pomerantz, Mark M., Ellis, Leigh, Pasaniuc, Bogdan, Lawrenson, Kate, Kelly, Kathleen, Zoubeidi, Amina, Hahn, William C., Beltran, Himisha, Long, Henry W., Brown, Myles, Corey, Eva, Freedman, Matthew L.
Publicado 2021

Liquid biopsy epigenomic profiling for cancer subtyping

por Baca, Sylvan C., Seo, Ji-Heui, Davidsohn, Matthew P., Fortunato, Brad, Semaan, Karl, Sotudian, Shahabbedin, Lakshminarayanan, Gitanjali, Diossy, Miklos, Qiu, Xintao, El Zarif, Talal, Savignano, Hunter, Canniff, John, Madueke, Ikenna, Saliby, Renee Maria, Zhang, Ziwei, Li, Rong, Jiang, Yijia, Taing, Len, Awad, Mark, Chau, Cindy H., DeCaprio, James A., Figg, William D., Greten, Tim F., Hata, Aaron N., Hodi, F. Stephen, Hughes, Melissa E., Ligon, Keith L., Lin, Nancy, Ng, Kimmie, Oser, Matthew G., Meador, Catherine, Parsons, Heather A., Pomerantz, Mark M., Rajan, Arun, Ritz, Jerome, Thakuria, Manisha, Tolaney, Sara M., Wen, Patrick Y., Long, Henry, Berchuck, Jacob E., Szallasi, Zoltan, Choueiri, Toni K., Freedman, Matthew L.
Publicado 2023

Integrative molecular characterization of sarcomatoid and rhabdoid renal cell carcinoma

por Bakouny, Ziad, Braun, David A., Shukla, Sachet A., Pan, Wenting, Gao, Xin, Hou, Yue, Flaifel, Abdallah, Tang, Stephen, Bosma-Moody, Alice, He, Meng Xiao, Vokes, Natalie, Nyman, Jackson, Xie, Wanling, Nassar, Amin H., Abou Alaiwi, Sarah, Flippot, Ronan, Bouchard, Gabrielle, Steinharter, John A., Nuzzo, Pier Vitale, Ficial, Miriam, Sant’Angelo, Miriam, Forman, Juliet, Berchuck, Jacob E., Dudani, Shaan, Bi, Kevin, Park, Jihye, Camp, Sabrina, Sticco-Ivins, Maura, Hirsch, Laure, Baca, Sylvan C., Wind-Rotolo, Megan, Ross-Macdonald, Petra, Sun, Maxine, Lee, Gwo-Shu Mary, Chang, Steven L., Wei, Xiao X., McGregor, Bradley A., Harshman, Lauren C., Genovese, Giannicola, Ellis, Leigh, Pomerantz, Mark, Hirsch, Michelle S., Freedman, Matthew L., Atkins, Michael B., Wu, Catherine J., Ho, Thai H., Linehan, W. Marston, McDermott, David F., Heng, Daniel Y. C., Viswanathan, Srinivas R., Signoretti, Sabina, Van Allen, Eliezer M., Choueiri, Toni K.
Publicado 2021