The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity

por Ziemert, Nadine, Podell, Sheila, Penn, Kevin, Badger, Jonathan H., Allen, Eric, Jensen, Paul R.
Publicado 2012

Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season

por Konotchick, Talina, Dupont, Christopher L, Valas, Ruben E, Badger, Jonathan H, Allen, Andrew E
Publicado 2013

Comparative analysis of programmed cell death pathways in filamentous fungi

por Fedorova, Natalie D, Badger, Jonathan H, Robson, Geoff D, Wortman, Jennifer R, Nierman, William C
Publicado 2005

IDEA: Interactive Display for Evolutionary Analyses

por Egan, Amy, Mahurkar, Anup, Crabtree, Jonathan, Badger, Jonathan H, Carlton, Jane M, Silva, Joana C
Publicado 2008

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265

por Alexiev, Alexandra, Coil, David A., Badger, Jonathan H., Enticknap, Julie, Ward, Naomi, Robb, Frank T., Eisen, Jonathan A.
Publicado 2014

Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

por Chen, Yuansha, Stine, O Colin, Badger, Jonathan H, Gil, Ana I, Nair, G Balakrish, Nishibuchi, Mitsuaki, Fouts, Derrick E
Publicado 2011

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12

por Coil, David A., Badger, Jonathan H., Forberger, Heather C., Riggs, Florenta, Madupu, Ramana, Fedorova, Nadia, Ward, Naomi, Robb, Frank T., Eisen, Jonathan A.
Publicado 2014

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yellowstonii Strain DSM 11347(T) (Phylum Nitrospirae)

por Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.
Publicado 2015

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium commune DSM 2178(T) (Phylum Thermodesulfobacteria)

por Bhatnagar, Srijak, Badger, Jonathan H., Madupu, Ramana, Khouri, Hoda M., O’Connor, Elizabeth M., Robb, Frank T., Ward, Naomi L., Eisen, Jonathan A.
Publicado 2015

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1

por Holland-Moritz, Hannah E., Coil, David A., Badger, Jonathan H., Dmitrov, George I., Khouri, Hoda, Ward, Naomi L., Robb, Frank T., Eisen, Jonathan A.
Publicado 2014

Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters

por Chen, Huan, Brinkac, Lauren M, Mishra, Pamela, Li, Nan, Lymperopoulou, Despoina S, Dickerson, Tamar L, Gordon-Bradley, Nadine, Williams, Henry N, Badger, Jonathan H
Publicado 2015

The Baltic Sea Virome: Diversity and Transcriptional Activity of DNA and RNA Viruses

por Zeigler Allen, Lisa, McCrow, John P., Ininbergs, Karolina, Dupont, Christopher L., Badger, Jonathan H., Hoffman, Jeffery M., Ekman, Martin, Allen, Andrew E., Bergman, Birgitta, Venter, J. Craig
Publicado 2017

The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing

por Fodor, Anthony A., DeSantis, Todd Z., Wylie, Kristine M., Badger, Jonathan H., Ye, Yuzhen, Hepburn, Theresa, Hu, Ping, Sodergren, Erica, Liolios, Konstantinos, Huot-Creasy, Heather, Birren, Bruce W., Earl, Ashlee M.
Publicado 2012

Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation

por Smith, Sarah R., Gillard, Jeroen T. F., Kustka, Adam B., McCrow, John P., Badger, Jonathan H., Zheng, Hong, New, Ashley M., Dupont, Chris L., Obata, Toshihiro, Fernie, Alisdair R., Allen, Andrew E.
Publicado 2016

Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation

por Smith, Sarah R., Gillard, Jeroen T. F., Kustka, Adam B., McCrow, John P., Badger, Jonathan H., Zheng, Hong, New, Ashley M., Dupont, Chris L., Obata, Toshihiro, Fernie, Alisdair R., Allen, Andrew E.
Publicado 2017

Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum

por Wu, Dongying, Raymond, Jason, Wu, Martin, Chatterji, Sourav, Ren, Qinghu, Graham, Joel E., Bryant, Donald A., Robb, Frank, Colman, Albert, Tallon, Luke J., Badger, Jonathan H., Madupu, Ramana, Ward, Naomi L., Eisen, Jonathan A.
Publicado 2009

Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic

por Allen, Lisa Zeigler, Allen, Eric E, Badger, Jonathan H, McCrow, John P, Paulsen, Ian T, Elbourne, Liam DH, Thiagarajan, Mathangi, Rusch, Doug B, Nealson, Kenneth H, Williamson, Shannon J, Venter, J Craig, Allen, Andrew E
Publicado 2012

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

por Hartman, Amber L., Norais, Cédric, Badger, Jonathan H., Delmas, Stéphane, Haldenby, Sam, Madupu, Ramana, Robinson, Jeffrey, Khouri, Hoda, Ren, Qinghu, Lowe, Todd M., Maupin-Furlow, Julie, Pohlschroder, Mecky, Daniels, Charles, Pfeiffer, Friedhelm, Allers, Thorsten, Eisen, Jonathan A.
Publicado 2010

De novo assembly of bacterial genomes from single cells

por Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L., Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L., Badger, Jonathan H., Novotny, Mark, Rusch, Douglas B., Fraser, Louise J., Gormley, Niall A., Schulz-Trieglaff, Ole, Smith, Geoffrey P., Evers, Dirk J., Pevzner, Pavel A., Lasken, Roger S.
Publicado 2011

Complete Genome Sequence of the N(2)-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice

por Fouts, Derrick E., Tyler, Heather L., DeBoy, Robert T., Daugherty, Sean, Ren, Qinghu, Badger, Jonathan H., Durkin, Anthony S., Huot, Heather, Shrivastava, Susmita, Kothari, Sagar, Dodson, Robert J., Mohamoud, Yasmin, Khouri, Hoda, Roesch, Luiz F. W., Krogfelt, Karen A., Struve, Carsten, Triplett, Eric W., Methé, Barbara A.
Publicado 2008