Somatic genomic mosaicism in the brain during aging: Scratching the surface

por Bae, Taejeong, Wang, Yifan, Vaccarino, Flora M, Abyzov, Alexej
Publicado 2022

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing

por Sarangi, Vivekananda, Jourdon, Alexandre, Bae, Taejeong, Panda, Arijit, Vaccarino, Flora, Abyzov, Alexej
Publicado 2020

Identification of upstream regulators for prognostic expression signature genes in colorectal cancer

por Bae, Taejeong, Rho, Kyoohyoung, Choi, Jin Woo, Horimoto, Katsuhisa, Kim, Wankyu, Kim, Sunghoon
Publicado 2013

Inferring modes of evolution from colorectal cancer with residual polyp of origin

por Kim, Minsoo, Druliner, Brooke R., Vasmatzis, Nikolaos, Bae, Taejeong, Chia, Nicholas, Abyzov, Alexej, Boardman, Lisa A.
Publicado 2017

All(2): A tool for selecting mosaic mutations from comprehensive multi-cell comparisons

por Sarangi, Vivekananda, Jang, Yeongjun, Suvakov, Milovan, Bae, Taejeong, Fasching, Liana, Sekar, Shobana, Tomasini, Livia, Mariani, Jessica, Vaccarino, Flora M., Abyzov, Alexej
Publicado 2022

Correction: All(2): A tool for selecting mosaic mutations from comprehensive multi-cell comparisons

por Sarangi, Vivekananda, Jang, Yeongjun, Suvakov, Milovan, Bae, Taejeong, Fasching, Liana, Sekar, Shobana, Tomasini, Livia, Mariani, Jessica, Vaccarino, Flora M., Abyzov, Alexej
Publicado 2022

Transcriptome analysis indicates TFEB1 and YEATS4 as regulatory transcription factors for drug resistance of ovarian cancer

por Kim, Yi Rang, Park, Mi Sung, Eum, Ki Hwan, Kim, Juhee, Lee, Jeong Won, Bae, Taejeong, Lee, Dae Ho, Choi, Jin Woo
Publicado 2015

Efficient reconstruction of cell lineage trees for cell ancestry and cancer

por Jang, Yeongjun, Fasching, Liana, Bae, Taejeong, Tomasini, Livia, Schreiner, Jeremy, Szekely, Anna, Fernandez, Thomas V, Leckman, James F, Vaccarino, Flora M, Abyzov, Alexej
Publicado 2023

GARNET – gene set analysis with exploration of annotation relations

por Rho, Kyoohyoung, Kim, Bumjin, Jang, Youngjun, Lee, Sanghyun, Bae, Taejeong, Seo, Jihae, Seo, Chaehwa, Lee, Jihyun, Kang, Hyunjung, Yu, Ungsik, Kim, Sunghoon, Lee, Sanghyuk, Kim, Wan Kyu
Publicado 2011

Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug

por Lee, Hee Sook, Bae, Taejeong, Lee, Ji-Hyun, Kim, Dae Gyu, Oh, Young Sun, Jang, Yeongjun, Kim, Ji-Tea, Lee, Jong-Jun, Innocenti, Alessio, Supuran, Claudiu T, Chen, Luonan, Rho, Kyoohyoung, Kim, Sunghoon
Publicado 2012

Colorectal Cancer with Residual Polyp of Origin: A Model of Malignant Transformation()()

por Druliner, Brooke R., Rashtak, Shahrooz, Ruan, Xiaoyang, Bae, Taejeong, Vasmatzis, Nikolaos, O’Brien, Daniel, Johnson, Ruth, Felmlee-Devine, Donna, Washechek-Aletto, Jill, Basu, Nivedita, Liu, Hongfang, Smyrk, Thomas, Abyzov, Alexej, Boardman, Lisa A.
Publicado 2016

Complex mosaic structural variations in human fetal brains

por Sekar, Shobana, Tomasini, Livia, Proukakis, Christos, Bae, Taejeong, Manlove, Logan, Jang, Yeongjun, Scuderi, Soraya, Zhou, Bo, Kalyva, Maria, Amiri, Anahita, Mariani, Jessica, Sedlazeck, Fritz J., Urban, Alexander E., Vaccarino, Flora M., Abyzov, Alexej
Publicado 2020

Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations

por Druliner, Brooke R., Wang, Panwen, Bae, Taejeong, Baheti, Saurabh, Slettedahl, Seth, Mahoney, Douglas, Vasmatzis, Nikolaos, Xu, Hang, Kim, Minsoo, Bockol, Matthew, O’Brien, Daniel, Grill, Diane, Warner, Nathaniel, Munoz-Gomez, Miguel, Kossick, Kimberlee, Johnson, Ruth, Mouchli, Mohamad, Felmlee-Devine, Donna, Washechek-Aletto, Jill, Smyrk, Thomas, Oberg, Ann, Wang, Junwen, Chia, Nicholas, Abyzov, Alexej, Ahlquist, David, Boardman, Lisa A.
Publicado 2018

Genomic data resources of the Brain Somatic Mosaicism Network for neuropsychiatric diseases

por Garrison, McKinzie A., Jang, Yeongjun, Bae, Taejeong, Cherskov, Adriana, Emery, Sarah B., Fasching, Liana, Jones, Attila, Moldovan, John B., Molitor, Cindy, Pochareddy, Sirisha, Peters, Mette A., Shin, Joo Heon, Wang, Yifan, Yang, Xiaoxu, Akbarian, Schahram, Chess, Andrew, Gage, Fred H., Gleeson, Joseph G., Kidd, Jeffrey M., McConnell, Michael, Mills, Ryan E., Moran, John V., Park, Peter J., Sestan, Nenad, Urban, Alexander E., Vaccarino, Flora M., Walsh, Christopher A., Weinberger, Daniel R., Wheelan, Sarah J., Abyzov, Alexej
Publicado 2023

Comprehensive identification of somatic nucleotide variants in human brain tissue

por Wang, Yifan, Bae, Taejeong, Thorpe, Jeremy, Sherman, Maxwell A., Jones, Attila G., Cho, Sean, Daily, Kenneth, Dou, Yanmei, Ganz, Javier, Galor, Alon, Lobon, Irene, Pattni, Reenal, Rosenbluh, Chaggai, Tomasi, Simone, Tomasini, Livia, Yang, Xiaoxu, Zhou, Bo, Akbarian, Schahram, Ball, Laurel L., Bizzotto, Sara, Emery, Sarah B., Doan, Ryan, Fasching, Liana, Jang, Yeongjun, Juan, David, Lizano, Esther, Luquette, Lovelace J., Moldovan, John B., Narurkar, Rujuta, Oetjens, Matthew T., Rodin, Rachel E., Sekar, Shobana, Shin, Joo Heon, Soriano, Eduardo, Straub, Richard E., Zhou, Weichen, Chess, Andrew, Gleeson, Joseph G., Marquès-Bonet, Tomas, Park, Peter J., Peters, Mette A., Pevsner, Jonathan, Walsh, Christopher A., Weinberger, Daniel R., Vaccarino, Flora M., Moran, John V., Urban, Alexander E., Kidd, Jeffrey M., Mills, Ryan E., Abyzov, Alexej
Publicado 2021

An integrated map of structural variation in 2,504 human genomes

por Sudmant, Peter H., Rausch, Tobias, Gardner, Eugene J., Handsaker, Robert E., Abyzov, Alexej, Huddleston, John, Zhang, Yan, Ye, Kai, Jun, Goo, Hsi-Yang Fritz, Markus, Konkel, Miriam K., Malhotra, Ankit, Stütz, Adrian M., Shi, Xinghua, Paolo Casale, Francesco, Chen, Jieming, Hormozdiari, Fereydoun, Dayama, Gargi, Chen, Ken, Malig, Maika, Chaisson, Mark J. P., Walter, Klaudia, Meiers, Sascha, Kashin, Seva, Garrison, Erik, Auton, Adam, Lam, Hugo Y. K., Jasmine Mu, Xinmeng, Alkan, Can, Antaki, Danny, Bae, Taejeong, Cerveira, Eliza, Chines, Peter, Chong, Zechen, Clarke, Laura, Dal, Elif, Ding, Li, Emery, Sarah, Fan, Xian, Gujral, Madhusudan, Kahveci, Fatma, Kidd, Jeffrey M., Kong, Yu, Lameijer, Eric-Wubbo, McCarthy, Shane, Flicek, Paul, Gibbs, Richard A., Marth, Gabor, Mason, Christopher E., Menelaou, Androniki, Muzny, Donna M., Nelson, Bradley J., Noor, Amina, Parrish, Nicholas F., Pendleton, Matthew, Quitadamo, Andrew, Raeder, Benjamin, Schadt, Eric E., Romanovitch, Mallory, Schlattl, Andreas, Sebra, Robert, Shabalin, Andrey A., Untergasser, Andreas, Walker, Jerilyn A., Wang, Min, Yu, Fuli, Zhang, Chengsheng, Zhang, Jing, Zheng-Bradley, Xiangqun, Zhou, Wanding, Zichner, Thomas, Sebat, Jonathan, Batzer, Mark A., McCarroll, Steven A., Mills, Ryan E., Gerstein, Mark B., Bashir, Ali, Stegle, Oliver, Devine, Scott E., Lee, Charles, Eichler, Evan E., Korbel, Jan O.
Publicado 2015