Deep Learning-Based Protein Features Predict Overall Survival and Chemotherapy Benefit in Gastric Cancer

por Zhao, Xuefei, Xia, Xia, Wang, Xinyue, Bai, Mingze, Zhan, Dongdong, Shu, Kunxian
Publicado 2022

LFQ-Based Peptide and Protein Intensity Differential Expression Analysis

por Bai, Mingze, Deng, Jingwen, Dai, Chengxin, Pfeuffer, Julianus, Sachsenberg, Timo, Perez-Riverol, Yasset
Publicado 2023

BioContainers Registry: searching bioinformatics and proteomics tools, packages, and containers

por Bai, Jingwen, Bandla, Chakradhar, Guo, Jiaxin, Alvarez, Roberto Vera, Bai, Mingze, Vizcaíno, Juan Antonio, Moreno, Pablo, Grüning, Björn, Sallou, Olivier, Perez-Riverol, Yasset
Publicado 2021

iProX: an integrated proteome resource

por Ma, Jie, Chen, Tao, Wu, Songfeng, Yang, Chunyuan, Bai, Mingze, Shu, Kunxian, Li, Kenli, Zhang, Guoqing, Jin, Zhong, He, Fuchu, Hermjakob, Henning, Zhu, Yunping
Publicado 2019

A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics

por Luo, Xiyang, Bittremieux, Wout, Griss, Johannes, Deutsch, Eric W., Sachsenberg, Timo, Levitsky, Lev I., Ivanov, Mark V., Bubis, Julia A., Gabriels, Ralf, Webel, Henry, Sanchez, Aniel, Bai, Mingze, Käll, Lukas, Perez-Riverol, Yasset
Publicado 2022

BioContainers: an open-source and community-driven framework for software standardization

por da Veiga Leprevost, Felipe, Grüning, Björn A, Alves Aflitos, Saulo, Röst, Hannes L, Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimenez, Rafael C, Sachsenberg, Timo, Pfeuffer, Julianus, Vera Alvarez, Roberto, Griss, Johannes, Nesvizhskii, Alexey I, Perez-Riverol, Yasset
Publicado 2017

Urine proteomics identifies biomarkers for diabetic kidney disease at different stages

por Fan, Guanjie, Gong, Tongqing, Lin, Yuping, Wang, Jianping, Sun, Lu, Wei, Hua, Yang, Xing, Liu, Zhenjie, Li, Xinliang, Zhao, Ling, Song, Lan, He, Jiali, Liu, Haibo, Li, Xiuming, Liu, Lifeng, Li, Anxiang, Lu, Qiyun, Zou, Dongyin, Wen, Jianxuan, Xia, Yaqing, Wu, Liyan, Huang, Haoyue, Zhang, Yuan, Xie, Wenwen, Huang, Jinzhu, Luo, Lulu, Wu, Lulu, He, Liu, Liang, Qingshun, Chen, Qubo, Chen, Guowei, Bai, Mingze, Qin, Jun, Ni, Xiaotian, Tang, Xianyu, Wang, Yi
Publicado 2021

A proteomics sample metadata representation for multiomics integration and big data analysis

por Dai, Chengxin, Füllgrabe, Anja, Pfeuffer, Julianus, Solovyeva, Elizaveta M., Deng, Jingwen, Moreno, Pablo, Kamatchinathan, Selvakumar, Kundu, Deepti Jaiswal, George, Nancy, Fexova, Silvie, Grüning, Björn, Föll, Melanie Christine, Griss, Johannes, Vaudel, Marc, Audain, Enrique, Locard-Paulet, Marie, Turewicz, Michael, Eisenacher, Martin, Uszkoreit, Julian, Van Den Bossche, Tim, Schwämmle, Veit, Webel, Henry, Schulze, Stefan, Bouyssié, David, Jayaram, Savita, Duggineni, Vinay Kumar, Samaras, Patroklos, Wilhelm, Mathias, Choi, Meena, Wang, Mingxun, Kohlbacher, Oliver, Brazma, Alvis, Papatheodorou, Irene, Bandeira, Nuno, Deutsch, Eric W., Vizcaíno, Juan Antonio, Bai, Mingze, Sachsenberg, Timo, Levitsky, Lev I., Perez-Riverol, Yasset
Publicado 2021