An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis

por Niaré, Karamoko, Greenhouse, Bryan, Bailey, Jeffrey A.
Publicado 2023

An Optimized GATK4 Pipeline for Plasmodium falciparum Whole Genome Sequencing Variant Calling and Analysis

por Niaré, Karamoko, Greenhouse, Bryan, Bailey, Jeffrey A
Publicado 2023

Airflows inside passenger cars and implications for airborne disease transmission

por Mathai, Varghese, Das, Asimanshu, Bailey, Jeffrey A., Breuer, Kenneth
Publicado 2021

coiaf: Directly estimating complexity of infection with allele frequencies

por Paschalidis, Aris, Watson, Oliver J., Aydemir, Ozkan, Verity, Robert, Bailey, Jeffrey A.
Publicado 2023

SeekDeep: single-base resolution de novo clustering for amplicon deep sequencing

por Hathaway, Nicholas J, Parobek, Christian M, Juliano, Jonathan J, Bailey, Jeffrey A
Publicado 2018

Sensitive detection of EBV microRNAs across cancer spectrum reveals association with decreased survival in adult acute myelocytic leukemia

por Movassagh, Mercedeh, Oduor, Cliff, Forconi, Catherine, Moormann, Ann M., Bailey, Jeffrey A.
Publicado 2019

Hotspots of mammalian chromosomal evolution

por Bailey, Jeffrey A, Baertsch, Robert, Kent, W James, Haussler, David, Eichler, Evan E
Publicado 2004

FLT1 and transcriptome-wide polyadenylation site (PAS) analysis in preeclampsia

por Ashar-Patel, Ami, Kaymaz, Yasin, Rajakumar, Augustine, Bailey, Jeffrey A., Karumanchi, S. Ananth, Moore, Melissa J.
Publicado 2017

Manipulating multiple sequence alignments via MaM and WebMaM

por Alkan, Can, Tüzün, Eray, Buard, Jerome, Lethiec, Franck, Eichler, Evan E., Bailey, Jeffrey A., Sahinalp, S. Cenk
Publicado 2005

Differing Patterns of Selection and Geospatial Genetic Diversity within Two Leading Plasmodium vivax Candidate Vaccine Antigens

por Parobek, Christian M., Bailey, Jeffrey A., Hathaway, Nicholas J., Socheat, Duong, Rogers, William O., Juliano, Jonathan J.
Publicado 2014

Impacts of Ecology, Parasite Antigenic Variation, and Human Genetics on RTS,S/AS01e Malaria Vaccine Efficacy

por Bell, Griffin J., Agnandji, Selidji Todagbe, Asante, Kwaku Poku, Ghansah, Anita, Kamthunzi, Portia, Emch, Michael, Bailey, Jeffrey A.
Publicado 2021

Immediate pools of malaria infections at diagnosis combined with targeted deep sequencing accurately quantifies frequency of drug resistance mutations

por Aydemir, Ozkan, Mensah, Benedicta, Marsh, Patrick W., Abuaku, Benjamin, Myers-Hansen, James Leslie, Bailey, Jeffrey A., Ghansah, Anita
Publicado 2021

Profiling genome-wide recombination in Epstein Barr virus reveals type-specific patterns and associations with endemic-Burkitt lymphoma

por Agwati, Eddy O., Oduor, Cliff I., Ayieko, Cyrus, Ong’echa, John Michael, Moormann, Ann M., Bailey, Jeffrey A.
Publicado 2022

Genome Landscape and Evolutionary Plasticity of Chromosomes in Malaria Mosquitoes

por Xia, Ai, Sharakhova, Maria V., Leman, Scotland C., Tu, Zhijian, Bailey, Jeffrey A., Smith, Christopher D., Sharakhov, Igor V.
Publicado 2010

Genome mapping and characterization of the Anopheles gambiae heterochromatin

por Sharakhova, Maria V, George, Phillip, Brusentsova, Irina V, Leman, Scotland C, Bailey, Jeffrey A, Smith, Christopher D, Sharakhov, Igor V
Publicado 2010

Integrative microRNA and mRNA deep-sequencing expression profiling in endemic Burkitt lymphoma

por Oduor, Cliff I., Kaymaz, Yasin, Chelimo, Kiprotich, Otieno, Juliana A., Ong’echa, John Michael, Moormann, Ann M., Bailey, Jeffrey A.
Publicado 2017

A New Hope for CD56(neg)CD16(pos) NK Cells as Unconventional Cytotoxic Mediators: An Adaptation to Chronic Diseases

por Forconi, Catherine S., Oduor, Cliff I., Oluoch, Peter O., Ong'echa, John M., Münz, Christian, Bailey, Jeffrey A., Moormann, Ann M.
Publicado 2020

Association of killer cell immunoglobulin-like receptors with endemic Burkitt lymphoma in Kenyan children

por Muriuki, Beatrice M., Forconi, Catherine S., Oluoch, Peter O., Bailey, Jeffrey A., Ghansah, Anita, Moormann, Ann M., Ong’echa, John M.
Publicado 2021

Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma

por Oduor, Cliff I., Movassagh, Mercedeh, Kaymaz, Yasin, Chelimo, Kiprotich, Otieno, Juliana, Ong'echa, John M., Moormann, Ann M., Bailey, Jeffrey A.
Publicado 2017

Sickle cell trait is not associated with endemic Burkitt lymphoma: An ethnicity and malaria endemicity-matched case–control study suggests factors controlling EBV may serve as a pr...

por Mulama, David H, Bailey, Jeffrey A, Foley, Joslyn, Chelimo, Kiprotich, Ouma, Collins, Jura, Walter GZO, Otieno, Juliana, Vulule, John, Moormann, Ann M
Publicado 2014