FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test

por Zhang, Yun, Aevermann, Brian D, Bakken, Trygve E, Miller, Jeremy A, Hodge, Rebecca D, Lein, Ed S, Scheuermann, Richard H
Publicado 2020

Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders

por Wang, Tianyun, Kim, Chang N., Bakken, Trygve E., Gillentine, Madelyn A., Henning, Barbara, Mao, Yafei, Gilissen, Christian, Nowakowski, Tomasz J., Eichler, Evan E.
Publicado 2022

A comparison of anatomic and cellular transcriptome structures across 40 human brain diseases

por Zeighami, Yashar, Bakken, Trygve E., Nickl-Jockschat, Thomas, Peterson, Zeru, Jegga, Anil G., Miller, Jeremy A., Schulkin, Jay, Evans, Alan C., Lein, Ed S., Hawrylycz, Michael
Publicado 2023

Common cell type nomenclature for the mammalian brain

por Miller, Jeremy A, Gouwens, Nathan W, Tasic, Bosiljka, Collman, Forrest, van Velthoven, Cindy TJ, Bakken, Trygve E, Hawrylycz, Michael J, Zeng, Hongkui, Lein, Ed S, Bernard, Amy
Publicado 2020

Multiple Alu Exonization in 3′UTR of a Primate-Specific Isoform of CYP20A1 Creates a Potential miRNA Sponge

por Bhattacharya, Aniket, Jha, Vineet, Singhal, Khushboo, Fatima, Mahar, Singh, Dayanidhi, Chaturvedi, Gaura, Dholakia, Dhwani, Kutum, Rintu, Pandey, Rajesh, Bakken, Trygve E, Seth, Pankaj, Pillai, Beena, Mukerji, Mitali
Publicado 2020

Neurodevelopmental disease genes implicated by de novo mutation and copy number variation morbidity

por Coe, Bradley P., Stessman, Holly A.F., Sulovari, Arvis, Geisheker, Madeleine R., Bakken, Trygve E., Lake, Allison M., Dougherty, Joseph D., Lein, Ed S., Hormozdiari, Fereydoun, Bernier, Raphael A., Eichler, Evan E.
Publicado 2018

Spatiotemporal dynamics of the postnatal developing primate brain transcriptome

por Bakken, Trygve E., Miller, Jeremy A., Luo, Rui, Bernard, Amy, Bennett, Jeffrey L., Lee, Chang-Kyu, Bertagnolli, Darren, Parikshak, Neelroop N., Smith, Kimberly A., Sunkin, Susan M., Amaral, David G., Geschwind, Daniel H., Lein, Ed S.
Publicado 2015

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks

por Smith, Stephen J, Sümbül, Uygar, Graybuck, Lucas T, Collman, Forrest, Seshamani, Sharmishtaa, Gala, Rohan, Gliko, Olga, Elabbady, Leila, Miller, Jeremy A, Bakken, Trygve E, Rossier, Jean, Yao, Zizhen, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka, Hawrylycz, Michael
Publicado 2019

Genetic identification of brain cell types underlying schizophrenia

por Skene, Nathan G, Bryois, Julien, Bakken, Trygve E, Breen, Gerome, Crowley, James J, Gaspar, Héléna A, Giusti-Rodriguez, Paola, Hodge, Rebecca D, Miller, Jeremy A, Muñoz-Manchado, Ana B, O’Donovan, Michael C, Owen, Michael J, Pardiñas, Antonio F, Ryge, Jesper, Walters, James T R, Linnarsson, Sten, Lein, Ed S, Sullivan, Patrick F, Hjerling-Leffler, Jens
Publicado 2018

Single-nucleus and single-cell transcriptomes compared in matched cortical cell types

por Bakken, Trygve E., Hodge, Rebecca D., Miller, Jeremy A., Yao, Zizhen, Nguyen, Thuc Nghi, Aevermann, Brian, Barkan, Eliza, Bertagnolli, Darren, Casper, Tamara, Dee, Nick, Garren, Emma, Goldy, Jeff, Graybuck, Lucas T., Kroll, Matthew, Lasken, Roger S., Lathia, Kanan, Parry, Sheana, Rimorin, Christine, Scheuermann, Richard H., Schork, Nicholas J., Shehata, Soraya I., Tieu, Michael, Phillips, John W., Bernard, Amy, Smith, Kimberly A., Zeng, Hongkui, Lein, Ed S., Tasic, Bosiljka
Publicado 2018

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

por Hodge, Rebecca D., Miller, Jeremy A., Novotny, Mark, Kalmbach, Brian E., Ting, Jonathan T., Bakken, Trygve E., Aevermann, Brian D., Barkan, Eliza R., Berkowitz-Cerasano, Madeline L., Cobbs, Charles, Diez-Fuertes, Francisco, Ding, Song-Lin, McCorrison, Jamison, Schork, Nicholas J., Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Yanny, Anna Marie, Steemers, Frank J., Phillips, John W., Bernard, Amy, Koch, Christof, Lasken, Roger S., Scheuermann, Richard H., Lein, Ed S.
Publicado 2020

Single-cell and single-nucleus RNA-seq uncovers shared and distinct axes of variation in dorsal LGN neurons in mice, non-human primates, and humans

por Bakken, Trygve E, van Velthoven, Cindy TJ, Menon, Vilas, Hodge, Rebecca D, Yao, Zizhen, Nguyen, Thuc Nghi, Graybuck, Lucas T, Horwitz, Gregory D, Bertagnolli, Darren, Goldy, Jeff, Yanny, Anna Marie, Garren, Emma, Parry, Sheana, Casper, Tamara, Shehata, Soraya I, Barkan, Eliza R, Szafer, Aaron, Levi, Boaz P, Dee, Nick, Smith, Kimberly A, Sunkin, Susan M, Bernard, Amy, Phillips, John, Hawrylycz, Michael J, Koch, Christof, Murphy, Gabe J, Lein, Ed, Zeng, Hongkui, Tasic, Bosiljka
Publicado 2021

Single nucleus multi-omics identifies human cortical cell regulatory genome diversity

por Luo, Chongyuan, Liu, Hanqing, Xie, Fangming, Armand, Ethan J., Siletti, Kimberly, Bakken, Trygve E., Fang, Rongxin, Doyle, Wayne I., Stuart, Tim, Hodge, Rebecca D., Hu, Lijuan, Wang, Bang-An, Zhang, Zhuzhu, Preissl, Sebastian, Lee, Dong-Sung, Zhou, Jingtian, Niu, Sheng-Yong, Castanon, Rosa, Bartlett, Anna, Rivkin, Angeline, Wang, Xinxin, Lucero, Jacinta, Nery, Joseph R., Davis, David A., Mash, Deborah C., Satija, Rahul, Dixon, Jesse R., Linnarsson, Sten, Lein, Ed, Behrens, M. Margarita, Ren, Bing, Mukamel, Eran A., Ecker, Joseph R.
Publicado 2022

Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type

por Boldog, Eszter, Bakken, Trygve E., Hodge, Rebecca D., Novotny, Mark, Aevermann, Brian D., Baka, Judith, Bordé, Sándor, Close, Jennie L., Diez-Fuertes, Francisco, Ding, Song-Lin, Faragó, Nóra, Kocsis, Ágnes K., Kovács, Balázs, Maltzer, Zoe, McCorrison, Jamison M., Miller, Jeremy A., Molnár, Gábor, Oláh, Gáspár, Ozsvár, Attila, Rózsa, Márton, Shehata, Soraya I., Smith, Kimberly A., Sunkin, Susan M., Tran, Danny N., Venepally, Pratap, Wall, Abby, Puskás, László G., Barzó, Pál, Steemers, Frank J., Schork, Nicholas J., Scheuermann, Richard H., Lasken, Roger S., Lein, Ed S., Tamás, Gábor
Publicado 2018

Target cell-specific synaptic dynamics of excitatory to inhibitory neuron connections in supragranular layers of human neocortex

por Kim, Mean-Hwan, Radaelli, Cristina, Thomsen, Elliot R, Monet, Deja, Chartrand, Thomas, Jorstad, Nikolas L, Mahoney, Joseph T, Taormina, Michael J, Long, Brian, Baker, Katherine, Bakken, Trygve E, Campagnola, Luke, Casper, Tamara, Clark, Michael, Dee, Nick, D'Orazi, Florence, Gamlin, Clare, Kalmbach, Brian E, Kebede, Sara, Lee, Brian R, Ng, Lindsay, Trinh, Jessica, Cobbs, Charles, Gwinn, Ryder P, Keene, C Dirk, Ko, Andrew L, Ojemann, Jeffrey G, Silbergeld, Daniel L, Sorensen, Staci A, Berg, Jim, Smith, Kimberly A, Nicovich, Philip R, Jarsky, Tim, Zeng, Hongkui, Ting, Jonathan T, Levi, Boaz P, Lein, Ed
Publicado 2023

Oligodendrocyte precursor cells ingest axons in the mouse neocortex

por Buchanan, JoAnn, Elabbady, Leila, Collman, Forrest, Jorstad, Nikolas L., Bakken, Trygve E., Ott, Carolyn, Glatzer, Jenna, Bleckert, Adam A., Bodor, Agnes L., Brittain, Derrick, Bumbarger, Daniel J., Mahalingam, Gayathri, Seshamani, Sharmishtaa, Schneider-Mizell, Casey, Takeno, Marc M., Torres, Russel, Yin, Wenjing, Hodge, Rebecca D., Castro, Manuel, Dorkenwald, Sven, Ih, Dodam, Jordan, Chris S., Kemnitz, Nico, Lee, Kisuk, Lu, Ran, Macrina, Thomas, Mu, Shang, Popovych, Sergiy, Silversmith, William M., Tartavull, Ignacio, Turner, Nicholas L., Wilson, Alyssa M., Wong, William, Wu, Jingpeng, Zlateski, Aleksandar, Zung, Jonathan, Lippincott-Schwartz, Jennifer, Lein, Ed S., Seung, H. Sebastian, Bergles, Dwight E., Reid, R. Clay, da Costa, Nuno Maçarico
Publicado 2022

The complete genome sequence of a Neandertal from the Altai Mountains

por Prüfer, Kay, Racimo, Fernando, Patterson, Nick, Jay, Flora, Sankararaman, Sriram, Sawyer, Susanna, Heinze, Anja, Renaud, Gabriel, Sudmant, Peter H., de Filippo, Cesare, Li, Heng, Mallick, Swapan, Dannemann, Michael, Fu, Qiaomei, Kircher, Martin, Kuhlwilm, Martin, Lachmann, Michael, Meyer, Matthias, Ongyerth, Matthias, Siebauer, Michael, Theunert, Christoph, Tandon, Arti, Moorjani, Priya, Pickrell, Joseph, Mullikin, James C., Vohr, Samuel H., Green, Richard E., Hellmann, Ines, Johnson, Philip L. F., Blanche, Hélène, Cann, Howard, Kitzman, Jacob O., Shendure, Jay, Eichler, Evan E., Lein, Ed S., Bakken, Trygve E., Golovanova, Liubov V., Doronichev, Vladimir B., Shunkov, Michael V., Derevianko, Anatoli P., Viola, Bence, Slatkin, Montgomery, Reich, David, Kelso, Janet, Pääbo, Svante
Publicado 2013

Conserved cell types with divergent features in human versus mouse cortex

por Hodge, Rebecca D, Bakken, Trygve E, Miller, Jeremy A, Smith, Kimberly A, Barkan, Eliza R, Graybuck, Lucas T, Close, Jennie L, Long, Brian, Johansen, Nelson, Penn, Osnat, Yao, Zizhen, Eggermont, Jeroen, Hollt, Thomas, Levi, Boaz P, Shehata, Soraya I, Aevermann, Brian, Beller, Allison, Bertagnolli, Darren, Brouner, Krissy, Casper, Tamara, Cobbs, Charles, Dalley, Rachel, Dee, Nick, Ding, Song-Lin, Ellenbogen, Richard G, Fong, Olivia, Garren, Emma, Goldy, Jeff, Gwinn, Ryder P, Hirschstein, Daniel, Keene, C Dirk, Keshk, Mohamed, Ko, Andrew L, Lathia, Kanan, Mahfouz, Ahmed, Maltzer, Zoe, McGraw, Medea, Nguyen, Thuc Nghi, Nyhus, Julie, Ojemann, Jeffrey G, Oldre, Aaron, Parry, Sheana, Reynolds, Shannon, Rimorin, Christine, Shapovalova, Nadiya V, Somasundaram, Saroja, Szafer, Aaron, Thomsen, Elliot R, Tieu, Michael, Quon, Gerald, Scheuermann, Richard H, Yuste, Rafael, Sunkin, Susan M, Lelieveldt, Boudewijn, Feng, David, Ng, Lydia, Bernard, Amy, Hawrylycz, Michael, Phillips, John W., Tasic, Bosiljka, Zeng, Hongkui, Jones, Allan R, Koch, Christof, Lein, Ed S
Publicado 2019

Comprehensive transcriptional map of primate brain development

por Bakken, Trygve E., Miller, Jeremy A., Ding, Song-Lin, Sunkin, Susan M., Smith, Kimberly A., Ng, Lydia, Szafer, Aaron, Dalley, Rachel A., Royall, Joshua J., Lemon, Tracy, Shapouri, Sheila, Aiona, Kaylynn, Arnold, James, Bennett, Jeffrey L., Bertagnolli, Darren, Bickley, Kristopher, Boe, Andrew, Brouner, Krissy, Butler, Stephanie, Byrnes, Emi, Caldejon, Shiella, Carey, Anita, Cate, Shelby, Chapin, Mike, Chen, Jefferey, Dee, Nick, Desta, Tsega, Dolbeare, Tim A., Dotson, Nadia, Ebbert, Amanda, Fulfs, Erich, Gee, Garrett, Gilbert, Terri L., Goldy, Jeff, Gourley, Lindsey, Gregor, Ben, Gu, Guangyu, Hall, Jon, Haradon, Zeb, Haynor, David R., Hejazinia, Nika, Hoerder-Suabedissen, Anna, Howard, Robert, Jochim, Jay, Kinnunen, Marty, Kriedberg, Ali, Kuan, Chihchau L., Lau, Christopher, Lee, Chang-Kyu, Lee, Felix, Luong, Lon, Mastan, Naveed, May, Ryan, Melchor, Jose, Mosqueda, Nerick, Mott, Erika, Ngo, Kiet, Nyhus, Julie, Oldre, Aaron, Olson, Eric, Parente, Jody, Parker, Patrick D., Parry, Sheana, Pendergraft, Julie, Potekhina, Lydia, Reding, Melissa, Riley, Zackery L., Roberts, Tyson, Rogers, Brandon, Roll, Kate, Rosen, David, Sandman, David, Sarreal, Melaine, Shapovalova, Nadiya, Shi, Shu, Sjoquist, Nathan, Sodt, Andy J., Townsend, Robbie, Velasquez, Lissette, Wagley, Udi, Wakeman, Wayne B., White, Cassandra, Bennett, Crissa, Wu, Jennifer, Young, Rob, Youngstrom, Brian L., Wohnoutka, Paul, Gibbs, Richard A., Rogers, Jeffrey, Hohmann, John G., Hawrylycz, Michael J., Hevner, Robert F., Molnár, Zoltán, Phillips, John W., Dang, Chinh, Jones, Allan R., Amaral, David G., Bernard, Amy, Lein, Ed S.
Publicado 2016

Comparative cellular analysis of motor cortex in human, marmoset and mouse

por Bakken, Trygve E., Jorstad, Nikolas L., Hu, Qiwen, Lake, Blue B., Tian, Wei, Kalmbach, Brian E., Crow, Megan, Hodge, Rebecca D., Krienen, Fenna M., Sorensen, Staci A., Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D., Aldridge, Andrew I., Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Castanon, Rosa G., Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, Dee, Nick, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Dong, Weixiu, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T., Herb, Brian R., Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, van Lew, Baldur, Li, Yang Eric, Liu, Christine S., Liu, Hanqing, Lucero, Jacinta D., Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A., Moussa, Marmar, Nery, Joseph R., Nicovich, Philip R., Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K., Owen, Scott, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M., Rimorin, Christine, Rivkin, Angeline, Romanow, William J., Sedeño-Cortés, Adriana E., Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A., Behrens, M. Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R., Höllt, Thomas, Horwitz, Gregory D., Keene, C. Dirk, Kharchenko, Peter V., Ko, Andrew L., Lelieveldt, Boudewijn P., Luo, Chongyuan, Mukamel, Eran A., Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H., Smith, Kimberly, Spain, William J., White, Owen R., Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z., McCarroll, Steven A., Ting, Jonathan T., Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R., Linnarsson, Sten, Lein, Ed S.
Publicado 2021