TIde: a software for the systematic scanning of drug targets in kinetic network models

por Schulz, Marvin, Bakker, Barbara M, Klipp, Edda
Publicado 2009

Kinetic data for modeling the dynamics of the enzymes involved in animal fatty acid synthesis

por Foko Kuate, Chilperic Armel, Ebenhöh, Oliver, Bakker, Barbara M., Raguin, Adélaïde
Publicado 2023

Short-Chain Fatty Acids in the Metabolism of Heart Failure – Rethinking the Fat Stigma

por Palm, Constantin L., Nijholt, Kirsten T., Bakker, Barbara M., Westenbrink, B. Daan
Publicado 2022

How Molecular Competition Influences Fluxes in Gene Expression Networks

por De Vos, Dirk, Bruggeman, Frank J., Westerhoff, Hans V., Bakker, Barbara M.
Publicado 2011

Dynamic Modelling under Uncertainty: The Case of Trypanosoma brucei Energy Metabolism

por Achcar, Fiona, Kerkhoven, Eduard J., Bakker, Barbara M., Barrett, Michael P., Breitling, Rainer
Publicado 2012

Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics

por van Eunen, Karen, Kiewiet, José A. L., Westerhoff, Hans V., Bakker, Barbara M.
Publicado 2012

Dissecting the Catalytic Mechanism of Trypanosoma brucei Trypanothione Synthetase by Kinetic Analysis and Computational Modeling

por Leroux, Alejandro E., Haanstra, Jurgen R., Bakker, Barbara M., Krauth-Siegel, R. Luise
Publicado 2013

Pyruvate Dehydrogenase Kinase Inhibition by Dichloroacetate in Melanoma Cells Unveils Metabolic Vulnerabilities

por Tiersma, Jiske F., Evers, Bernard, Bakker, Barbara M., Jalving, Mathilde, de Jong, Steven
Publicado 2022

A model reduction method for biochemical reaction networks

por Rao, Shodhan, der Schaft, Arjan van, Eunen, Karen van, Bakker, Barbara M, Jayawardhana, Bayu
Publicado 2014

The promiscuous enzyme medium-chain 3-keto-acyl-CoA thiolase triggers a vicious cycle in fatty-acid beta-oxidation

por Martines, Anne-Claire M. F., van Eunen, Karen, Reijngoud, Dirk-Jan, Bakker, Barbara M.
Publicado 2017

The Effects of Butyrate on Induced Metabolic-Associated Fatty Liver Disease in Precision-Cut Liver Slices

por Prins, Grietje H., Rios-Morales, Melany, Gerding, Albert, Reijngoud, Dirk-Jan, Olinga, Peter, Bakker, Barbara M.
Publicado 2021

Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis

por Nilsson, Avlant, Haanstra, Jurgen R., Engqvist, Martin, Gerding, Albert, Bakker, Barbara M., Klingmüller, Ursula, Teusink, Bas, Nielsen, Jens
Publicado 2020

Heptanoate Improves Compensatory Mechanism of Glucose Homeostasis in Mitochondrial Long-Chain Fatty Acid Oxidation Defect

por Nurjanah, Siti, Gerding, Albert, Vieira-Lara, Marcel A., Evers, Bernard, Langelaar-Makkinje, Miriam, Spiekerkoetter, Ute, Bakker, Barbara M., Tucci, Sara
Publicado 2023

Simultaneous Quantification of the Concentration and Carbon Isotopologue Distribution of Polar Metabolites in a Single Analysis by Gas Chromatography and Mass Spectrometry

por Evers, Bernard, Gerding, Albert, Boer, Theo, Heiner-Fokkema, M. Rebecca, Jalving, Mathilde, Wahl, S. Aljoscha, Reijngoud, Dirk-Jan, Bakker, Barbara M.
Publicado 2021

Transcriptome-wide analysis of trypanosome mRNA decay reveals complex degradation kinetics and suggests a role for co-transcriptional degradation in determining mRNA levels

por Fadda, Abeer, Ryten, Mark, Droll, Dorothea, Rojas, Federico, Färber, Valentin, Haanstra, Jurgen R, Merce, Clemetine, Bakker, Barbara M, Matthews, Keith, Clayton, Christine
Publicado 2014

Dynamic Methods for Childhood Hypoglycemia Phenotyping: A Narrative Review

por Rossi, Alessandro, Rutten, Martijn G. S., van Dijk, Theo H., Bakker, Barbara M., Reijngoud, Dirk-Jan, Oosterveer, Maaike H., Derks, Terry G. J.
Publicado 2022

The Short-Chain Fatty Acid Uptake Fluxes by Mice on a Guar Gum Supplemented Diet Associate with Amelioration of Major Biomarkers of the Metabolic Syndrome

por den Besten, Gijs, Havinga, Rick, Bleeker, Aycha, Rao, Shodhan, Gerding, Albert, van Eunen, Karen, Groen, Albert K., Reijngoud, Dirk-Jan, Bakker, Barbara M.
Publicado 2014

Bistability in fatty-acid oxidation resulting from substrate inhibition

por Abegaz, Fentaw, Martines, Anne-Claire M. F., Vieira-Lara, Marcel A., Rios-Morales, Melany, Reijngoud, Dirk-Jan, Wit, Ernst C., Bakker, Barbara M.
Publicado 2021

Running wheel access fails to resolve impaired sustainable health in mice feeding a high fat sucrose diet

por Reijne, Aaffien C., Talarovicova, A., Ciapaite, Jolita, Bruggink, J.E., Bleeker, A., Groen, Albert K., Reijngoud, Dirk-Jan, Bakker, Barbara M., van Dijk, Gertjan
Publicado 2019

Simultaneous Induction of Glycolysis and Oxidative Phosphorylation during Activation of Hepatic Stellate Cells Reveals Novel Mitochondrial Targets to Treat Liver Fibrosis

por Smith-Cortinez, Natalia, van Eunen, Karen, Heegsma, Janette, Serna-Salas, Sandra Alejandra, Sydor, Svenja, Bechmann, Lars P., Moshage, Han, Bakker, Barbara M., Faber, Klaas Nico
Publicado 2020