Transcriptome analysis of heterogeneity in mouse model of metastatic breast cancer

por Ionkina, Anastasia A., Balderrama-Gutierrez, Gabriela, Ibanez, Krystian J., Phan, Steve Huy D., Cortez, Angelique N., Mortazavi, Ali, Prescher, Jennifer A.
Publicado 2021

The genome of Peromyscus leucopus, natural host for Lyme disease and other emerging infections

por Long, Anthony D., Baldwin-Brown, James, Tao, Yuan, Cook, Vanessa J., Balderrama-Gutierrez, Gabriela, Corbett-Detig, Russell, Mortazavi, Ali, Barbour, Alan G.
Publicado 2019

An Infection-Tolerant Mammalian Reservoir for Several Zoonotic Agents Broadly Counters the Inflammatory Effects of Endotoxin

por Balderrama-Gutierrez, Gabriela, Milovic, Ana, Cook, Vanessa J., Islam, M. Nurul, Zhang, Youwen, Kiaris, Hippokratis, Belisle, John T., Mortazavi, Ali, Barbour, Alan G.
Publicado 2021

Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq

por Rebboah, Elisabeth, Reese, Fairlie, Williams, Katherine, Balderrama-Gutierrez, Gabriela, McGill, Cassandra, Trout, Diane, Rodriguez, Isaryhia, Liang, Heidi, Wold, Barbara J., Mortazavi, Ali
Publicado 2021

Modulation of C5a–C5aR1 signaling alters the dynamics of AD progression

por Carvalho, Klebea, Schartz, Nicole D., Balderrama-Gutierrez, Gabriela, Liang, Heidi Y., Chu, Shu-Hui, Selvan, Purnika, Gomez-Arboledas, Angela, Petrisko, Tiffany J., Fonseca, Maria I., Mortazavi, Ali, Tenner, Andrea J.
Publicado 2022

C5aR1 antagonism alters microglial polarization and mitigates disease progression in a mouse model of Alzheimer’s disease

por Gomez-Arboledas, Angela, Carvalho, Klebea, Balderrama-Gutierrez, Gabriela, Chu, Shu-Hui, Liang, Heidi Yahan, Schartz, Nicole D., Selvan, Purnika, Petrisko, Tiffany J., Pan, Miranda A., Mortazavi, Ali, Tenner, Andrea J.
Publicado 2022

Systematic phenotyping and characterization of the 5xFAD mouse model of Alzheimer’s disease

por Forner, Stefania, Kawauchi, Shimako, Balderrama-Gutierrez, Gabriela, Kramár, Enikö A., Matheos, Dina P., Phan, Jimmy, Javonillo, Dominic I., Tran, Kristine M., Hingco, Edna, da Cunha, Celia, Rezaie, Narges, Alcantara, Joshua A., Baglietto-Vargas, David, Jansen, Camden, Neumann, Jonathan, Wood, Marcelo A., MacGregor, Grant R., Mortazavi, Ali, Tenner, Andrea J., LaFerla, Frank M., Green, Kim N.
Publicado 2021

Generation of a humanized Aβ expressing mouse demonstrating aspects of Alzheimer’s disease-like pathology

por Baglietto-Vargas, David, Forner, Stefania, Cai, Lena, Martini, Alessandra C., Trujillo-Estrada, Laura, Swarup, Vivek, Nguyen, Marie Minh Thu, Do Huynh, Kelly, Javonillo, Dominic I., Tran, Kristine Minh, Phan, Jimmy, Jiang, Shan, Kramár, Enikö A., Nuñez-Diaz, Cristina, Balderrama-Gutierrez, Gabriela, Garcia, Franklin, Childs, Jessica, Rodriguez-Ortiz, Carlos J., Garcia-Leon, Juan Antonio, Kitazawa, Masashi, Shahnawaz, Mohammad, Matheos, Dina P., Ma, Xinyi, Da Cunha, Celia, Walls, Ken C., Ager, Rahasson R., Soto, Claudio, Gutierrez, Antonia, Moreno-Gonzalez, Ines, Mortazavi, Ali, Tenner, Andrea J., MacGregor, Grant R., Wood, Marcelo, Green, Kim N., LaFerla, Frank M.
Publicado 2021

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

por Reese, Fairlie, Williams, Brian, Balderrama-Gutierrez, Gabriela, Wyman, Dana, Çelik, Muhammed Hasan, Rebboah, Elisabeth, Rezaie, Narges, Trout, Diane, Razavi-Mohseni, Milad, Jiang, Yunzhe, Borsari, Beatrice, Morabito, Samuel, Liang, Heidi Yahan, McGill, Cassandra J., Rahmanian, Sorena, Sakr, Jasmine, Jiang, Shan, Zeng, Weihua, Carvalho, Klebea, Weimer, Annika K., Dionne, Louise A., McShane, Ariel, Bedi, Karan, Elhajjajy, Shaimae I., Upchurch, Sean, Jou, Jennifer, Youngworth, Ingrid, Gabdank, Idan, Sud, Paul, Jolanki, Otto, Strattan, J. Seth, Kagda, Meenakshi S., Snyder, Michael P., Hitz, Ben C., Moore, Jill E., Weng, Zhiping, Bennett, David, Reinholdt, Laura, Ljungman, Mats, Beer, Michael A., Gerstein, Mark B., Pachter, Lior, Guigó, Roderic, Wold, Barbara J., Mortazavi, Ali
Publicado 2023

The ENCODE Uniform Analysis Pipelines

por Hitz, Benjamin C., Jin-Wook, Lee, Jolanki, Otto, Kagda, Meenakshi S., Graham, Keenan, Sud, Paul, Gabdank, Idan, Strattan, J. Seth, Sloan, Cricket A., Dreszer, Timothy, Rowe, Laurence D., Podduturi, Nikhil R., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Ho, Marcus, Miyasato, Stuart, Simison, Matt, Tanaka, Forrest, Luo, Yunhai, Whaling, Ian, Hong, Eurie L., Lee, Brian T., Sandstrom, Richard, Rynes, Eric, Nelson, Jemma, Nishida, Andrew, Ingersoll, Alyssa, Buckley, Michael, Frerker, Mark, Kim, Daniel S, Boley, Nathan, Trout, Diane, Dobin, Alex, Rahmanian, Sorena, Wyman, Dana, Balderrama-Gutierrez, Gabriela, Reese, Fairlie, Durand, Neva C., Dudchenko, Olga, Weisz, David, Rao, Suhas S. P., Blackburn, Alyssa, Gkountaroulis, Dimos, Sadr, Mahdi, Olshansky, Moshe, Eliaz, Yossi, Nguyen, Dat, Bochkov, Ivan, Shamim, Muhammad Saad, Mahajan, Ragini, Aiden, Erez, Gingeras, Tom, Heath, Simon, Hirst, Martin, Kent, W. James, Kundaje, Anshul, Mortazavi, Ali, Wold, Barbara, Cherry, J. Michael
Publicado 2023

The ENCODE Uniform Analysis Pipelines

por Hitz, Benjamin C., Lee, Jin-Wook, Jolanki, Otto, Kagda, Meenakshi S., Graham, Keenan, Sud, Paul, Gabdank, Idan, Strattan, J. Seth, Sloan, Cricket A., Dreszer, Timothy, Rowe, Laurence D., Podduturi, Nikhil R., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Ho, Marcus, Miyasato, Stuart, Simison, Matt, Tanaka, Forrest, Luo, Yunhai, Whaling, Ian, Hong, Eurie L., Lee, Brian T., Sandstrom, Richard, Rynes, Eric, Nelson, Jemma, Nishida, Andrew, Ingersoll, Alyssa, Buckley, Michael, Frerker, Mark, Kim, Daniel S, Boley, Nathan, Trout, Diane, Dobin, Alex, Rahmanian, Sorena, Wyman, Dana, Balderrama-Gutierrez, Gabriela, Reese, Fairlie, Durand, Neva C., Dudchenko, Olga, Weisz, David, Rao, Suhas S. P., Blackburn, Alyssa, Gkountaroulis, Dimos, Sadr, Mahdi, Olshansky, Moshe, Eliaz, Yossi, Nguyen, Dat, Bochkov, Ivan, Shamim, Muhammad Saad, Mahajan, Ragini, Aiden, Erez, Gingeras, Tom, Heath, Simon, Hirst, Martin, Kent, W. James, Kundaje, Anshul, Mortazavi, Ali, Wold, Barbara, Cherry, J. Michael
Publicado 2023

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

por Pardo-Palacios, Francisco J., Wang, Dingjie, Reese, Fairlie, Diekhans, Mark, Carbonell-Sala, Sílvia, Williams, Brian, Loveland, Jane E., De María, Maite, Adams, Matthew S., Balderrama-Gutierrez, Gabriela, Behera, Amit K., Gonzalez, Jose M., Hunt, Toby, Lagarde, Julien, Liang, Cindy E., Li, Haoran, Jerryd Meade, Marcus, Moraga Amador, David A., Prjibelski, Andrey D., Birol, Inanc, Bostan, Hamed, Brooks, Ashley M., Hasan Çelik, Muhammed, Chen, Ying, Du, Mei R,M., Felton, Colette, Göke, Jonathan, Hafezqorani, Saber, Herwig, Ralf, Kawaji, Hideya, Lee, Joseph, Liang Li, Jian, Lienhard, Matthias, Mikheenko, Alla, Mulligan, Dennis, Ming Nip, Ka, Pertea, Mihaela, Ritchie, Matthew E., Sim, Andre D., Tang, Alison D., Kei Wan, Yuk, Wang, Changqing, Wong, Brandon Y., Yang, Chen, Barnes, If, Berry, Andrew, Capella, Salvador, Dhillon, Namrita, Fernandez-Gonzalez, Jose M., Ferrández-Peral, Luis, Garcia-Reyero, Natàlia, Goetz, Stefan, Hernández-Ferrer, Carles, Kondratova, Liudmyla, Liu, Tianyuan, Martinez-Martin, Alessandra, Menor, Carlos, Mestre-Tomás, Jorge, Mudge, Jonathan M., Panayotova, Nedka G., Paniagua, Alejandro, Repchevsky, Dmitry, Rouchka, Eric, Saint-John, Brandon, Sapena, Enrique, Sheynkman, Leon, Laird Smith, Melissa, Suner, Marie-Marthe, Takahashi, Hazuki, Youngworth, Ingrid Ashley., Carninci, Piero, Denslow, Nancy D., Guigó, Roderic, Hunter, Margaret E., Tilgner, Hagen U., Wold, Barbara J., Vollmers, Christopher, Frankish, Adam, Fai Au, Kin, Sheynkman, Gloria M., Mortazavi, Ali, Conesa, Ana, Brooks, Angela N.
Publicado 2023