SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

por Pachkov, Mikhail, Balwierz, Piotr J., Arnold, Phil, Ozonov, Evgeniy, van Nimwegen, Erik
Publicado 2013

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

por Balwierz, Piotr J., Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J., Zavolan, Mihaela, van Nimwegen, Erik
Publicado 2014

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

por Arnold, Phil, Schöler, Anne, Pachkov, Mikhail, Balwierz, Piotr J., Jørgensen, Helle, Stadler, Michael B., van Nimwegen, Erik, Schübeler, Dirk
Publicado 2013

Expression and Processing of a Small Nucleolar RNA from the Epstein-Barr Virus Genome

por Hutzinger, Roland, Feederle, Regina, Mrazek, Jan, Schiefermeier, Natalia, Balwierz, Piotr J., Zavolan, Mihaela, Polacek, Norbert, Delecluse, Henri-Jacques, Hüttenhofer, Alexander
Publicado 2009

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

por Balwierz, Piotr J, Carninci, Piero, Daub, Carsten O, Kawai, Jun, Hayashizaki, Yoshihide, Van Belle, Werner, Beisel, Christian, van Nimwegen, Erik
Publicado 2009

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways

por Gruber, Andreas J., Grandy, William A., Balwierz, Piotr J., Dimitrova, Yoana A., Pachkov, Mikhail, Ciaudo, Constance, van Nimwegen, Erik, Zavolan, Mihaela
Publicado 2014

Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics

por López-Pérez, Ana R., Balwierz, Piotr J., Lenhard, Boris, Muller, Ferenc, Wardle, Fiona C., Manfroid, Isabelle, Voz, Marianne L., Peers, Bernard
Publicado 2021

Parity induces differentiation and reduces Wnt/Notch signaling ratio and proliferation potential of basal stem/progenitor cells isolated from mouse mammary epithelium

por Meier-Abt, Fabienne, Milani, Emanuela, Roloff, Tim, Brinkhaus, Heike, Duss, Stephan, Meyer, Dominique S, Klebba, Ina, Balwierz, Piotr J, van Nimwegen, Erik, Bentires-Alj, Mohamed
Publicado 2013

Germ cell differentiation requires Tdrd7-dependent chromatin and transcriptome reprogramming marked by germ plasm relocalization

por D’Orazio, Fabio M., Balwierz, Piotr J., González, Ada Jimenez, Guo, Yixuan, Hernández-Rodríguez, Benjamín, Wheatley, Lucy, Jasiulewicz, Aleksandra, Hadzhiev, Yavor, Vaquerizas, Juan M., Cairns, Bradley, Lenhard, Boris, Müller, Ferenc
Publicado 2021

FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

por Severin, Jessica, Waterhouse, Andrew M, Kawaji, Hideya, Lassmann, Timo, van Nimwegen, Erik, Balwierz, Piotr J, de Hoon, Michiel JL, Hume, David A, Carninci, Piero, Hayashizaki, Yoshihide, Suzuki, Harukazu, Daub, Carsten O, Forrest, Alistair RR
Publicado 2009

Adipose Tissue MicroRNAs as Regulators of CCL2 Production in Human Obesity

por Arner, Erik, Mejhert, Niklas, Kulyté, Agné, Balwierz, Piotr J., Pachkov, Mikhail, Cormont, Mireille, Lorente-Cebrián, Silvia, Ehrlund, Anna, Laurencikiene, Jurga, Hedén, Per, Dahlman-Wright, Karin, Tanti, Jean-François, Hayashizaki, Yoshihide, Rydén, Mikael, Dahlman, Ingrid, van Nimwegen, Erik, Daub, Carsten O., Arner, Peter
Publicado 2012

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

por Baranasic, Damir, Hörtenhuber, Matthias, Balwierz, Piotr J., Zehnder, Tobias, Mukarram, Abdul Kadir, Nepal, Chirag, Várnai, Csilla, Hadzhiev, Yavor, Jimenez-Gonzalez, Ada, Li, Nan, Wragg, Joseph, D’Orazio, Fabio M., Relic, Dorde, Pachkov, Mikhail, Díaz, Noelia, Hernández-Rodríguez, Benjamín, Chen, Zelin, Stoiber, Marcus, Dong, Michaël, Stevens, Irene, Ross, Samuel E., Eagle, Anne, Martin, Ryan, Obasaju, Oluwapelumi, Rastegar, Sepand, McGarvey, Alison C., Kopp, Wolfgang, Chambers, Emily, Wang, Dennis, Kim, Hyejeong R., Acemel, Rafael D., Naranjo, Silvia, Łapiński, Maciej, Chong, Vanessa, Mathavan, Sinnakaruppan, Peers, Bernard, Sauka-Spengler, Tatjana, Vingron, Martin, Carninci, Piero, Ohler, Uwe, Lacadie, Scott Allen, Burgess, Shawn M., Winata, Cecilia, van Eeden, Freek, Vaquerizas, Juan M., Gómez-Skarmeta, José Luis, Onichtchouk, Daria, Brown, Ben James, Bogdanovic, Ozren, van Nimwegen, Erik, Westerfield, Monte, Wardle, Fiona C., Daub, Carsten O., Lenhard, Boris, Müller, Ferenc
Publicado 2022

Amphioxus functional genomics and the origins of vertebrate gene regulation

por Marlétaz, Ferdinand, Firbas, Panos N., Maeso, Ignacio, Tena, Juan J., Bogdanovic, Ozren, Perry, Malcolm, Wyatt, Christopher D. R., de la Calle-Mustienes, Elisa, Bertrand, Stephanie, Burguera, Demian, Acemel, Rafael D., van Heeringen, Simon J., Naranjo, Silvia, Herrera-Ubeda, Carlos, Skvortsova, Ksenia, Jimenez-Gancedo, Sandra, Aldea, Daniel, Marquez, Yamile, Buono, Lorena, Kozmikova, Iryna, Permanyer, Jon, Louis, Alexandra, Albuixech-Crespo, Beatriz, Le Petillon, Yann, Leon, Anthony, Subirana, Lucie, Balwierz, Piotr J., Duckett, Paul Edward, Farahani, Ensieh, Aury, Jean-Marc, Mangenot, Sophie, Wincker, Patrick, Albalat, Ricard, Benito-Gutiérrez, Èlia, Cañestro, Cristian, Castro, Filipe, D’Aniello, Salvatore, Ferrier, David E. K., Huang, Shengfeng, Laudet, Vincent, Marais, Gabriel A. B., Pontarotti, Pierre, Schubert, Michael, Seitz, Hervé, Somorjai, Ildiko, Takahashi, Tokiharu, Mirabeau, Olivier, Xu, Anlong, Yu, Jr-Kai, Carninci, Piero, Martinez-Morales, Juan Ramon, Crollius, Hugues Roest, Kozmik, Zbynek, Weirauch, Matthew T., Garcia-Fernàndez, Jordi, Lister, Ryan, Lenhard, Boris, Holland, Peter W. H., Escriva, Hector, Gómez-Skarmeta, Jose Luis, Irimia, Manuel
Publicado 2018