An event-driven approach for studying gene block evolution in bacteria

por Ream, David C., Bankapur, Asma R., Friedberg, Iddo
Publicado 2015

Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome

por Begum, Ghausia, Albanna, Ammar, Bankapur, Asma, Nassir, Nasna, Tambi, Richa, Berdiev, Bakhrom K., Akter, Hosneara, Karuvantevida, Noushad, Kellam, Barbara, Alhashmi, Deena, Sung, Wilson W. L., Thiruvahindrapuram, Bhooma, Alsheikh-Ali, Alawi, Scherer, Stephen W., Uddin, Mohammed
Publicado 2021

Single-cell transcriptome identifies molecular subtype of autism spectrum disorder impacted by de novo loss-of-function variants regulating glial cells

por Nassir, Nasna, Bankapur, Asma, Samara, Bisan, Ali, Abdulrahman, Ahmed, Awab, Inuwa, Ibrahim M., Zarrei, Mehdi, Safizadeh Shabestari, Seyed Ali, AlBanna, Ammar, Howe, Jennifer L., Berdiev, Bakhrom K., Scherer, Stephen W., Woodbury-Smith, Marc, Uddin, Mohammed
Publicado 2021

Analyzing single cell transcriptome data from severe COVID-19 patients

por Nassir, Nasna, Tambi, Richa, Bankapur, Asma, Karuvantevida, Noushad, Khansaheb, Hamdah Hassan, Zehra, Binte, Begum, Ghausia, Hameid, Reem Abdel, Ahmed, Awab, Deesi, Zulfa, Alkhajeh, Abdulmajeed, Uddin, K.M.Furkan, Akter, Hosneara, Safizadeh Shabestari, Seyed Ali, Gaudet, Mellissa, Hachim, Mahmood Yaseen, Alsheikh-Ali, Alawi, Berdiev, Bakhrom K., Al Heialy, Saba, Uddin, Mohammed
Publicado 2022

Single-cell transcriptome identifies FCGR3B upregulated subtype of alveolar macrophages in patients with critical COVID-19

por Nassir, Nasna, Tambi, Richa, Bankapur, Asma, Al Heialy, Saba, Karuvantevida, Noushad, Khansaheb, Hamda Hassan, Zehra, Binte, Begum, Ghausia, Hameid, Reem Abdel, Ahmed, Awab, Deesi, Zulfa, Alkhajeh, Abdulmajeed, Uddin, K.M. Furkan, Akter, Hosneara, Safizadeh Shabestari, Seyed Ali, Almidani, Omar, Islam, Amirul, Gaudet, Mellissa, Kandasamy, Richard Kumaran, Loney, Tom, Tayoun, Ahmad Abou, Nowotny, Norbert, Woodbury-Smith, Marc, Rahman, Proton, Kuebler, Wolfgang M., Yaseen Hachim, Mahmood, Casanova, Jean-Laurent, Berdiev, Bakhrom K., Alsheikh-Ali, Alawi, Uddin, Mohammed
Publicado 2021

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

por Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Kahanda, Indika, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, BKC, Dukka, Khan, Ishita K., Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., del Pozo, Angela, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Di Carlo, Stefano, Politano, Gianfranco, Savino, Alessandro, Rehman, Hafeez Ur, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., van Dijk, Aalt D. J., Gemovic, Branislava, Glisic, Sanja, Perovic, Vladmir, Veljkovic, Veljko, Veljkovic, Nevena, Almeida-e-Silva, Danillo C., Vencio, Ricardo Z. N., Sharan, Malvika, Vogel, Jörg, Kansakar, Lakesh, Zhang, Shanshan, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
Publicado 2016