Sequences Promoting Recoding Are Singular Genomic Elements

por Baranov, Pavel V., Gurvich, Olga
Publicado 2009

Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale

por Michel, Audrey M, Baranov, Pavel V
Publicado 2013

A frameshift in time

por Yordanova, Martina M, Baranov, Pavel V
Publicado 2022

Codon Size Reduction as the Origin of the Triplet Genetic Code

por Baranov, Pavel V., Venin, Maxime, Provan, Gregory
Publicado 2009

Editorial: Computational Epitranscriptomics: Bioinformatic Approaches for the Analysis of RNA Modifications

por Dassi, Erik, Baranov, Pavel V., Pelizzola, Mattia
Publicado 2020

PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data

por Kumari, Romika, Michel, Audrey M., Baranov, Pavel V.
Publicado 2018

Computational approach for calculating the probability of eukaryotic translation initiation from ribo-seq data that takes into account leaky scanning

por Michel, Audrey M, Andreev, Dmitry E, Baranov, Pavel V
Publicado 2014

CodonLogo: a sequence logo-based viewer for codon patterns

por Sharma, Virag, Murphy, David P., Provan, Gregory, Baranov, Pavel V.
Publicado 2012

Exploring Evidence of Non-coding RNA Translation With Trips-Viz and GWIPS-Viz Browsers

por Zaheed, Oza, Kiniry, Stephen J., Baranov, Pavel V., Dean, Kellie
Publicado 2021

Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs

por Bekaert, Michaël, Ivanov, Ivaylo P, Atkins, John F, Baranov, Pavel V
Publicado 2008

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

por O'Connor, Patrick B. F., Andreev, Dmitry E., Baranov, Pavel V.
Publicado 2016

Stop codon readthrough contexts influence reporter expression differentially depending on the presence of an IRES

por Yordanova, Martina M., Loughran, Gary, Atkins, John F., Baranov, Pavel V.
Publicado 2022

Darned in 2013: inclusion of model organisms and linking with Wikipedia

por Kiran, Anmol M., O'Mahony, John J., Sanjeev, Komal, Baranov, Pavel V.
Publicado 2013

Identification of the nature of reading frame transitions observed in prokaryotic genomes

por Antonov, Ivan, Coakley, Arthur, Atkins, John F., Baranov, Pavel V., Borodovsky, Mark
Publicado 2013

GWIPS‐viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms

por Michel, Audrey M., Ahern, Anna M., Donohue, Claire A., Baranov, Pavel V.
Publicado 2015

Opposite Expression Patterns of Spry3 and p75NTR in Cerebellar Vermis Suggest a Male-Specific Mechanism of Autism Pathogenesis

por Ning, Zhenfei, Williams, John M., Kumari, Romika, Baranov, Pavel V., Moore, Tom
Publicado 2019

Trips-Viz: an environment for the analysis of public and user-generated ribosome profiling data

por Kiniry, Stephen J, Judge, Ciara E, Michel, Audrey M, Baranov, Pavel V
Publicado 2021

Specific reverse transcriptase slippage at the HIV ribosomal frameshift sequence: potential implications for modulation of GagPol synthesis

por Penno, Christophe, Kumari, Romika, Baranov, Pavel V., van Sinderen, Douwe, Atkins, John F.
Publicado 2017

Stimulation of reverse transcriptase generated cDNAs with specific indels by template RNA structure: retrotransposon, dNTP balance, RT-reagent usage

por Penno, Christophe, Kumari, Romika, Baranov, Pavel V., van Sinderen, Douwe, Atkins, John F.
Publicado 2017

Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts

por Loughran, Gary, Li, Xiang, O’Loughlin, Sinead, Atkins, John F, Baranov, Pavel V
Publicado 2022