psichomics: graphical application for alternative splicing quantification and analysis

por Saraiva-Agostinho, Nuno, Barbosa-Morais, Nuno L
Publicado 2019

Unraveling Targetable Systemic and Cell-Type-Specific Molecular Phenotypes of Alzheimer’s and Parkinson’s Brains With Digital Cytometry

por Bordone, Marie C., Barbosa-Morais, Nuno L.
Publicado 2020

Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors

por Gama-Carvalho, Margarida, Barbosa-Morais, Nuno L, Brodsky, Alexander S, Silver, Pamela A, Carmo-Fonseca, Maria
Publicado 2006

Statistical issues in the analysis of Illumina data

por Dunning, Mark J, Barbosa-Morais, Nuno L, Lynch, Andy G, Tavaré, Simon, Ritchie, Matthew E
Publicado 2008

Spike-in validation of an Illumina-specific variance-stabilizing transformation

por Dunning, Mark J, Ritchie, Matthew E, Barbosa-Morais, Nuno L, Tavaré, Simon, Lynch, Andy G
Publicado 2008

Trypanosoma brucei metabolism is under circadian control

por Rijo-Ferreira, Filipa, Pinto-Neves, Daniel, Barbosa-Morais, Nuno L, Takahashi, Joseph S, Figueiredo, Luisa M.
Publicado 2017

Expression microarray reproducibility is improved by optimising purification steps in RNA amplification and labelling

por Naderi, Ali, Ahmed, Ahmed A, Barbosa-Morais, Nuno L, Aparicio, Samuel, Brenton, James D, Caldas, Carlos
Publicado 2004

Pan-cancer association of a centrosome amplification gene expression signature with genomic alterations and clinical outcome

por de Almeida, Bernardo P., Vieira, André F., Paredes, Joana, Bettencourt-Dias, Mónica, Barbosa-Morais, Nuno L.
Publicado 2019

ASD: a bioinformatics resource on alternative splicing

por Stamm, Stefan, Riethoven, Jean-Jack, Le Texier, Vincent, Gopalakrishnan, Chellappa, Kumanduri, Vasudev, Tang, Yesheng, Barbosa-Morais, Nuno L., Thanaraj, Thangavel Alphonse
Publicado 2006

New androgen receptor genomic targets show an interaction with the ETS1 transcription factor

por Massie, Charles E, Adryan, Boris, Barbosa-Morais, Nuno L, Lynch, Andy G, Tran, Maxine G, Neal, David E, Mills, Ian G
Publicado 2007

A consensus prognostic gene expression classifier for ER positive breast cancer

por Teschendorff, Andrew E, Naderi, Ali, Barbosa-Morais, Nuno L, Pinder, Sarah E, Ellis, Ian O, Aparicio, Sam, Brenton, James D, Caldas, Carlos
Publicado 2006

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

por Barbosa-Morais, Nuno L., Dunning, Mark J., Samarajiwa, Shamith A., Darot, Jeremy F. J., Ritchie, Matthew E., Lynch, Andy G., Tavaré, Simon
Publicado 2010

Tissue-specific splicing factor gene expression signatures

por Grosso, Ana Rita, Gomes, Anita Q., Barbosa-Morais, Nuno L., Caldeira, Sandra, Thorne, Natalie P., Grech, Godfrey, von Lindern, Marieke, Carmo-Fonseca, Maria
Publicado 2008

Widespread intron retention in mammals functionally tunes transcriptomes

por Braunschweig, Ulrich, Barbosa-Morais, Nuno L., Pan, Qun, Nachman, Emil N., Alipanahi, Babak, Gonatopoulos-Pournatzis, Thomas, Frey, Brendan, Irimia, Manuel, Blencowe, Benjamin J.
Publicado 2014

Neuronal regulation of type 2 innate lymphoid cells via neuromedin U

por Cardoso, Vânia, Chesné, Julie, Ribeiro, Hélder, García-Cassani, Bethania, Carvalho, Tânia, Bouchery, Tiffany, Shah, Kathleen, Barbosa-Morais, Nuno L., Harris, Nicola, Veiga-Fernandes, Henrique
Publicado 2017

Androgen-dependent alternative mRNA isoform expression in prostate cancer cells

por Munkley, Jennifer, Maia, Teresa M., Ibarluzea, Nekane, Livermore, Karen E., Vodak, Daniel, Ehrmann, Ingrid, James, Katherine, Rajan, Prabhakar, Barbosa-Morais, Nuno L., Elliott, David J.
Publicado 2018

MMASS: an optimized array-based method for assessing CpG island methylation

por Ibrahim, Ashraf E. K., Thorne, Natalie P., Baird, Katie, Barbosa-Morais, Nuno L., Tavaré, Simon, Collins, V. Peter, Wyllie, Andrew H., Arends, Mark J., Brenton, James D.
Publicado 2006

Mouse Spinal Cord Vascular Transcriptome Analysis Identifies CD9 and MYLIP as Injury-Induced Players

por Martins, Isaura, Neves-Silva, Dalila, Ascensão-Ferreira, Mariana, Dias, Ana Filipa, Ribeiro, Daniel, Isidro, Ana Filipa, Quitéria, Raquel, Paramos-de-Carvalho, Diogo, Barbosa-Morais, Nuno L., Saúde, Leonor
Publicado 2023

Cell Cycle Genes Are the Evolutionarily Conserved Targets of the E2F4 Transcription Factor

por Conboy, Caitlin M., Spyrou, Christiana, Thorne, Natalie P., Wade, Elizabeth J., Barbosa-Morais, Nuno L., Wilson, Michael D., Bhattacharjee, Arindam, Young, Richard A., Tavaré, Simon, Lees, Jacqueline A., Odom, Duncan T.
Publicado 2007

The splicing factor XAB2 interacts with ERCC1-XPF and XPG for R-loop processing

por Goulielmaki, Evi, Tsekrekou, Maria, Batsiotos, Nikos, Ascensão-Ferreira, Mariana, Ledaki, Eleftheria, Stratigi, Kalliopi, Chatzinikolaou, Georgia, Topalis, Pantelis, Kosteas, Theodore, Altmüller, Janine, Demmers, Jeroen A., Barbosa-Morais, Nuno L., Garinis, George A.
Publicado 2021