Multivalent state transitions shape the intratumoral composition of small cell lung carcinoma

por Gopal, Priyanka, Petty, Aaron, Rogacki, Kevin, Bera, Titas, Bareja, Rohan, Peacock, Craig D., Abazeed, Mohamed E.
Publicado 2022

Loss of an Androgen-Inactivating and Isoform-Specific HSD17B4 Splice Form Enables Emergence of Castration-Resistant Prostate Cancer

por Ko, Hyun-Kyung, Berk, Michael, Chung, Yoon-Mi, Willard, Belinda, Bareja, Rohan, Rubin, Mark, Sboner, Andrea, Sharifi, Nima
Publicado 2018

SAT-339 Cross-Talk with Breast Adipose Tissue Contributes to Obesity-induced DNA Damage in BRCA Mutant Breast Epithelial Cells

por Bhardwaj, Priya, Iyengar, Neil, Oshchepkova, Sofya, Bareja, Rohan, Dannenberg, Andrew, Elemento, Olivier, Morrow, Monica, Spector, Jason, Brown, Kristy
Publicado 2019

MDB-43. GRADIENT ENTROPY-BASED RADIOMIC RISK-SCORE FROM T1-WEIGHTED PRE-TREATMENT MRI SCANS CAN PREDICT SURVIVAL IN PEDIATRIC MEDULLOBLASTOMA

por Bareja, Rohan, Ismail, Marwa, Martin, Doug, Nayate, Ameya, Yadav, Ipsa, Labbad, Murad, Tamrazi, Benita, Salloum, Ralph, Margol, Ashley, Judkins, Alexander, Iyer, Sukanya, de Blank, Peter, Tiwari, Pallavi
Publicado 2023

MDB-44. A TRANSFER LEARNING APPROACH FOR AUTOMATIC SEGMENTATION OF TUMOR SUB-COMPARTMENTS AND TUMOR HABITAT IN PEDIATRIC MEDULLOBLASTOMA

por Bareja, Rohan, Ismail, Marwa, Martin, Doug, Nayate, Ameya, Yadav, Ipsa, Labbad, Murad, Tamrazi, Benita, Salloum, Ralph, Margol, Ashley, Judkins, Alexander, Iyer, Sukanya, de Blank, Peter, Tiwari, Pallavi
Publicado 2023

Oncogenic BRAF disrupts thyroid morphogenesis and function via twist expression

por Anelli, Viviana, Villefranc, Jacques A, Chhangawala, Sagar, Martinez-McFaline, Raul, Riva, Eleonora, Nguyen, Anvy, Verma, Akanksha, Bareja, Rohan, Chen, Zhengming, Scognamiglio, Theresa, Elemento, Olivier, Houvras, Yariv
Publicado 2017

Epithelial plasticity can generate multi-lineage phenotypes in human and murine bladder cancers

por Sfakianos, John P., Daza, Jorge, Hu, Yang, Anastos, Harry, Bryant, Geoffrey, Bareja, Rohan, Badani, Ketan K., Galsky, Matthew D., Elemento, Olivier, Faltas, Bishoy M., Mulholland, David J.
Publicado 2020

Concerted regulation of retinal pigment epithelium basement membrane and barrier function by angiocrine factors

por Benedicto, Ignacio, Lehmann, Guillermo L., Ginsberg, Michael, Nolan, Daniel J., Bareja, Rohan, Elemento, Olivier, Salfati, Zelda, Alam, Nazia M., Prusky, Glen T., Llanos, Pierre, Rabbany, Sina Y., Maminishkis, Arvydas, Miller, Sheldon S., Rafii, Shahin, Rodriguez-Boulan, Enrique
Publicado 2017

Functional comparison of exome capture-based methods for transcriptomic profiling of formalin-fixed paraffin-embedded tumors

por Shohdy, Kyrillus S., Bareja, Rohan, Sigouros, Michael, Wilkes, David C., Dorsaint, Princesca, Manohar, Jyothi, Bockelman, Daniel, Xiang, Jenny Z., Kim, Rob, Ohara, Kentaro, Eng, Kenneth, Mosquera, Juan Miguel, Elemento, Olivier, Sboner, Andrea, Alonso, Alicia, Faltas, Bishoy M.
Publicado 2021

Whole-genome characterization of myoepithelial carcinomas of the soft tissue

por Cyrta, Joanna, Rosiene, Joel, Bareja, Rohan, Kudman, Sarah, Al Zoughbi, Wael, Motanagh, Samaneh, Wilkes, David C., Eng, Kenneth, Zhang, Tuo, Sticca, Evan, Mathew, Susan, Rubin, Mark A., Sboner, Andrea, Elemento, Olivier, Rubin, Brian P., Imielinski, Marcin, Mosquera, Juan Miguel
Publicado 2022

Utility of multimodality molecular profiling for pediatric patients with central nervous system tumors

por Rajappa, Prajwal, Eng, Kenneth W, Bareja, Rohan, Bander, Evan D, Yuan, Melissa, Dua, Alisha, Bhanu Maachani, Uday, Snuderl, Matija, Pan, Heng, Zhang, Tuo, Tosi, Umberto, Ivasyk, Iryna, Souweidane, Mark M, Elemento, Olivier, Sboner, Andreas, Greenfield, Jeffrey P, Pisapia, David J
Publicado 2022

Fusions involving BCOR and CREBBP are rare events in infiltrating glioma

por Pisapia, David J., Ohara, Kentaro, Bareja, Rohan, Wilkes, David C., Hissong, Erika, Croyle, Jaclyn A., Kim, Joon-Hyung, Saab, Jad, MacDonald, Theresa Y., Beg, Shaham, O’Reilly, Catherine, Kudman, Sarah, Rubin, Mark A., Elemento, Olivier, Sboner, Andrea, Greenfield, Jeffrey, Mosquera, Juan Miguel
Publicado 2020

A nuclear cAMP microdomain suppresses tumor growth by Hippo pathway inactivation

por Drozdz, Marek M., Doane, Ashley S., Alkallas, Rached, Desman, Garrett, Bareja, Rohan, Reilly, Michael, Bang, Jakyung, Yusupova, Maftuna, You, Jaewon, Eraslan, Zuhal, Wang, Jenny Z., Verma, Akanksha, Aguirre, Kelsey, Kane, Elsbeth, Watson, Ian R., Elemento, Olivier, Piskounova, Elena, Merghoub, Taha, Zippin, Jonathan H.
Publicado 2022

CD38 is methylated in prostate cancer and regulates extracellular NAD(+)

por Mottahedeh, Jack, Haffner, Michael C., Grogan, Tristan R., Hashimoto, Takao, Crowell, Preston D., Beltran, Himisha, Sboner, Andrea, Bareja, Rohan, Esopi, David, Isaacs, William B., Yegnasubramanian, Srinivasan, Rettig, Matthew B., Elashoff, David A., Platz, Elizabeth A., De Marzo, Angelo M., Teitell, Michael A., Goldstein, Andrew S.
Publicado 2018

Suppression of insulin feedback enhances the efficacy of PI3K inhibitors

por Hopkins, Benjamin D., Pauli, Chantal, Du, Xing, Wang, Diana G., Li, Xiang, Wu, David, Amadiume, Solomon C., Goncalves, Marcus D., Hodakoski, Cindy, Lundquist, Mark R., Bareja, Rohan, Ma, Yan, Harris, Emily M., Sboner, Andrea, Beltran, Himisha, Rubin, Mark A., Mukherjee, Siddhartha, Cantley, Lewis C.
Publicado 2018

Small Cell Carcinoma of the Ovary, Hypercalcemic Type (SCCOHT) beyond SMARCA4 Mutations: A Comprehensive Genomic Analysis

por Auguste, Aurélie, Blanc-Durand, Félix, Deloger, Marc, Le Formal, Audrey, Bareja, Rohan, Wilkes, David C., Richon, Catherine, Brunn, Béatrice, Caron, Olivier, Devouassoux-Shisheboran, Mojgan, Gouy, Sébastien, Morice, Philippe, Bentivegna, Enrica, Sboner, Andrea, Elemento, Olivier, Rubin, Mark A., Pautier, Patricia, Genestie, Catherine, Cyrta, Joanna, Leary, Alexandra
Publicado 2020

Temporal evolution of cellular heterogeneity during the progression to advanced AR-negative prostate cancer

por Brady, Nicholas J., Bagadion, Alyssa M., Singh, Richa, Conteduca, Vincenza, Van Emmenis, Lucie, Arceci, Elisa, Pakula, Hubert, Carelli, Ryan, Khani, Francesca, Bakht, Martin, Sigouros, Michael, Bareja, Rohan, Sboner, Andrea, Elemento, Olivier, Tagawa, Scott, Nanus, David M., Loda, Massimo, Beltran, Himisha, Robinson, Brian, Rickman, David S.
Publicado 2021

Integration of whole-exome and anchored PCR-based next generation sequencing significantly increases detection of actionable alterations in precision oncology

por Beg, Shaham, Bareja, Rohan, Ohara, Kentaro, Eng, Kenneth Wha, Wilkes, David C., Pisapia, David J., Zoughbi, Wael Al, Kudman, Sarah, Zhang, Wei, Rao, Rema, Manohar, Jyothi, Kane, Troy, Sigouros, Michael, Xiang, Jenny Zhaoying, Khani, Francesca, Robinson, Brian D., Faltas, Bishoy M., Sternberg, Cora N., Sboner, Andrea, Beltran, Himisha, Elemento, Olivier, Mosquera, Juan Miguel
Publicado 2020

Metastatic pancreatic neuroendocrine tumors feature elevated T cell infiltration

por Greenberg, Jacques, Limberg, Jessica, Verma, Akanksha, Kim, David, Chen, Xiang, Lee, Yeon J., Moore, Maureen D., Ullmann, Timothy M., Thiesmeyer, Jessica W., Loewenstein, Zachary, Chen, Kevin J., Egan, Caitlin E., Stefanova, Dessislava, Bareja, Rohan, Zarnegar, Rasa, Finnerty, Brendan M., Scognamiglio, Theresa, Du, Yi-Chieh Nancy, Elemento, Olivier, Fahey, Thomas J., Min, Irene M.
Publicado 2022

Kaiso (ZBTB33) subcellular partitioning functionally links LC3A/B, the tumor microenvironment, and breast cancer survival

por Singhal, Sandeep K., Byun, Jung S., Park, Samson, Yan, Tingfen, Yancey, Ryan, Caban, Ambar, Hernandez, Sara Gil, Hewitt, Stephen M., Boisvert, Heike, Hennek, Stephanie, Bobrow, Mark, Ahmed, Md Shakir Uddin, White, Jason, Yates, Clayton, Aukerman, Andrew, Vanguri, Rami, Bareja, Rohan, Lenci, Romina, Farré, Paula Lucia, De Siervi, Adriana, Nápoles, Anna María, Vohra, Nasreen, Gardner, Kevin
Publicado 2021