Plugging Small RNAs into the Network

por Barquist, Lars
Publicado 2020

xREI: a phylo-grammar visualization webserver

por Barquist, Lars, Holmes, Ian
Publicado 2008

Ushering in a new era of single-cell transcriptomics in bacteria

por Homberger, Christina, Barquist, Lars, Vogel, Jörg
Publicado 2022

Resolving host–pathogen interactions by dual RNA-seq

por Westermann, Alexander J., Barquist, Lars, Vogel, Jörg
Publicado 2017

Approaches to querying bacterial genomes with transposon-insertion sequencing

por Barquist, Lars, Boinett, Christine J., Cain, Amy K.
Publicado 2013

Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica

por Wheeler, Nicole E., Gardner, Paul P., Barquist, Lars
Publicado 2018

Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads

por Homberger, Christina, Hayward, Regan J., Barquist, Lars, Vogel, Jörg
Publicado 2023

Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens

por Michaux, Charlotte, Gerovac, Milan, Hansen, Elisabeth E, Barquist, Lars, Vogel, Jörg
Publicado 2022

A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes

por Wheeler, Nicole E., Barquist, Lars, Kingsley, Robert A., Gardner, Paul P.
Publicado 2016

A high-resolution transcriptome map identifies small RNA regulation of metabolism in the gut microbe Bacteroides thetaiotaomicron

por Ryan, Daniel, Jenniches, Laura, Reichardt, Sarah, Barquist, Lars, Westermann, Alexander J.
Publicado 2020

INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors

por Hör, Jens, Jung, Jakob, Ðurica-Mitić, Svetlana, Barquist, Lars, Vogel, Jörg
Publicado 2022

RNIE: genome-wide prediction of bacterial intrinsic terminators

por Gardner, Paul P., Barquist, Lars, Bateman, Alex, Nawrocki, Eric P., Weinberg, Zasha
Publicado 2011

The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq

por Heidrich, Nadja, Bauriedl, Saskia, Barquist, Lars, Li, Lei, Schoen, Christoph, Vogel, Jörg
Publicado 2017

Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON web server

por Jung, Jakob, Popella, Linda, Do, Phuong Thao, Pfau, Patrick, Vogel, Jörg, Barquist, Lars
Publicado 2023

A High-Resolution View of Genome-Wide Pneumococcal Transformation

por Croucher, Nicholas J., Harris, Simon R., Barquist, Lars, Parkhill, Julian, Bentley, Stephen D.
Publicado 2012

Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein

por Gerovac, Milan, El Mouali, Youssef, Kuper, Jochen, Kisker, Caroline, Barquist, Lars, Vogel, Jörg
Publicado 2020

Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium

por Michaux, Charlotte, Hansen, Elisabeth E., Jenniches, Laura, Gerovac, Milan, Barquist, Lars, Vogel, Jörg
Publicado 2020

Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics

por Popella, Linda, Jung, Jakob, Popova, Kristina, Ðurica-Mitić, Svetlana, Barquist, Lars, Vogel, Jörg
Publicado 2021

The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition

por Bauriedl, Saskia, Gerovac, Milan, Heidrich, Nadja, Bischler, Thorsten, Barquist, Lars, Vogel, Jörg, Schoen, Christoph
Publicado 2020

Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli

por Popella, Linda, Jung, Jakob, Do, Phuong Thao, Hayward, Regan J, Barquist, Lars, Vogel, Jörg
Publicado 2022