Automated splitting into batches for observational biomedical studies with sequential processing

por Burger, Bram, Vaudel, Marc, Barsnes, Harald
Publicado 2022

Importance of Block Randomization When Designing Proteomics Experiments

por Burger, Bram, Vaudel, Marc, Barsnes, Harald
Publicado 2020

MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences

por Barsnes, Harald, Mikalsen, Svein-Ole, Eidhammer, Ingvar
Publicado 2006

Blind search for post-translational modifications and amino acid substitutions using peptide mass fingerprints from two proteases

por Barsnes, Harald, Mikalsen, Svein-Ole, Eidhammer, Ingvar
Publicado 2008

OLS Dialog: An open-source front end to the Ontology Lookup Service

por Barsnes, Harald, Côté, Richard G, Eidhammer, Ingvar, Martens, Lennart
Publicado 2010

PeptideShaker Online: A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data

por Farag, Yehia Mokhtar, Horro, Carlos, Vaudel, Marc, Barsnes, Harald
Publicado 2021

The Ontology Lookup Service: bigger and better

por Côté, Richard, Reisinger, Florian, Martens, Lennart, Barsnes, Harald, Vizcaino, Juan Antonio, Hermjakob, Henning
Publicado 2010

Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra()

por Hulstaert, Niels, Reisinger, Florian, Rameseder, Jonathan, Barsnes, Harald, Vizcaíno, Juan Antonio, Martens, Lennart
Publicado 2013

compomics-utilities: an open-source Java library for computational proteomics

por Barsnes, Harald, Vaudel, Marc, Colaert, Niklaas, Helsens, Kenny, Sickmann, Albert, Berven, Frode S, Martens, Lennart
Publicado 2011

DeNovoGUI: An Open Source Graphical User Interface for de Novo Sequencing of Tandem Mass Spectra

por Muth, Thilo, Weilnböck, Lisa, Rapp, Erdmann, Huber, Christian G., Martens, Lennart, Vaudel, Marc, Barsnes, Harald
Publicado 2013

OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets

por Perez‐Riverol, Yasset, Ternent, Tobias, Koch, Maximilian, Barsnes, Harald, Vrousgou, Olga, Jupp, Simon, Vizcaíno, Juan Antonio
Publicado 2017

Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis

por Guldbrandsen, Astrid, Lereim, Ragnhild Reehorst, Jacobsen, Mari, Garberg, Hilde, Kroksveen, Ann Cathrine, Barsnes, Harald, Berven, Frode S.
Publicado 2020

Exploring the potential of public proteomics data

por Vaudel, Marc, Verheggen, Kenneth, Csordas, Attila, Ræder, Helge, Berven, Frode S., Martens, Lennart, Vizcaíno, Juan A., Barsnes, Harald
Publicado 2015

The Proteomics Identifications database: 2010 update

por Vizcaíno, Juan Antonio, Côté, Richard, Reisinger, Florian, Barsnes, Harald, Foster, Joseph M., Rameseder, Jonathan, Hermjakob, Henning, Martens, Lennart
Publicado 2010

Extending protein interaction networks using proteoforms and small molecules

por Hernández Sánchez, Luis Francisco, Burger, Bram, Castro Campos, Rodrigo Alexander, Johansson, Stefan, Njølstad, Pål Rasmus, Barsnes, Harald, Vaudel, Marc
Publicado 2023

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping

por Sánchez, Luis Francisco Hernández, Burger, Bram, Horro, Carlos, Fabregat, Antonio, Johansson, Stefan, Njølstad, Pål Rasmus, Barsnes, Harald, Hermjakob, Henning, Vaudel, Marc
Publicado 2019

In-depth Characterization of the Cerebrospinal Fluid (CSF) Proteome Displayed Through the CSF Proteome Resource (CSF-PR)

por Guldbrandsen, Astrid, Vethe, Heidrun, Farag, Yehia, Oveland, Eystein, Garberg, Hilde, Berle, Magnus, Myhr, Kjell-Morten, Opsahl, Jill A., Barsnes, Harald, Berven, Frode S.
Publicado 2014

Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis

por Oveland, Eystein, Ahmad, Intakhar, Lereim, Ragnhild Reehorst, Kroksveen, Ann Cathrine, Barsnes, Harald, Guldbrandsen, Astrid, Myhr, Kjell-Morten, Bø, Lars, Berven, Frode S., Wergeland, Stig
Publicado 2021

Leptin Receptor Signaling Regulates Protein Synthesis Pathways and Neuronal Differentiation in Pluripotent Stem Cells

por Gupta, Manoj K., Vethe, Heidrun, Softic, Samir, Rao, Tata Nageswara, Wagh, Vilas, Shirakawa, Jun, Barsnes, Harald, Vaudel, Marc, Takatani, Tomozumi, Kahraman, Sevim, Sakaguchi, Masaji, Martinez, Rachael, Hu, Jiang, Bjørlykke, Yngvild, Raeder, Helge, Kulkarni, Rohit N.
Publicado 2020

BioContainers: an open-source and community-driven framework for software standardization

por da Veiga Leprevost, Felipe, Grüning, Björn A, Alves Aflitos, Saulo, Röst, Hannes L, Uszkoreit, Julian, Barsnes, Harald, Vaudel, Marc, Moreno, Pablo, Gatto, Laurent, Weber, Jonas, Bai, Mingze, Jimenez, Rafael C, Sachsenberg, Timo, Pfeuffer, Julianus, Vera Alvarez, Roberto, Griss, Johannes, Nesvizhskii, Alexey I, Perez-Riverol, Yasset
Publicado 2017