A Survey of Flow Cytometry Data Analysis Methods

por Bashashati, Ali, Brinkman, Ryan R.
Publicado 2009

Towards Development of a 3-State Self-Paced Brain-Computer Interface

por Bashashati, Ali, Ward, Rabab K., Birch, Gary E.
Publicado 2007

Merging Mixture Components for Cell Population Identification in Flow Cytometry

por Finak, Greg, Bashashati, Ali, Brinkman, Ryan, Gottardo, Raphaël
Publicado 2009

Comparing Different Classifiers in Sensory Motor Brain Computer Interfaces

por Bashashati, Hossein, Ward, Rabab K., Birch, Gary E., Bashashati, Ali
Publicado 2015

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models

por Funnell, Tyler, Zhang, Allen W., Grewal, Diljot, McKinney, Steven, Bashashati, Ali, Wang, Yi Kan, Shah, Sohrab P.
Publicado 2019

Sa1062: POST-COVID-19 DISORDERS OF GUT-BRAIN INTERACTION (DGBI): AN INTERNET-BASED EPIDEMIOLOGICAL STUDY

por Bashashati, Mohammad, Nakhli, Ramin Ebrahim, Sarosiek, Irene, Sarosiek, Jerzy, Rezaie, Ali, Zuckerman, Marc, Wasserman, Max J. Schmulson, Bashashati, Ali
Publicado 2022

DriverNet: uncovering the impact of somatic driver mutations on transcriptional networks in cancer

por Bashashati, Ali, Haffari, Gholamreza, Ding, Jiarui, Ha, Gavin, Lui, Kenneth, Rosner, Jamie, Huntsman, David G, Caldas, Carlos, Aparicio, Samuel A, Shah, Sohrab P
Publicado 2012

Kronos: a workflow assembler for genome analytics and informatics

por Taghiyar, M. Jafar, Rosner, Jamie, Grewal, Diljot, Grande, Bruno M., Aniba, Radhouane, Grewal, Jasleen, Boutros, Paul C., Morin, Ryan D., Bashashati, Ali, Shah, Sohrab P.
Publicado 2017

Pharmacological systems analysis defines EIF4A3 functions in cell-cycle and RNA stress granule formation

por Mazloomian, Alborz, Araki, Shinsuke, Ohori, Momoko, El-Naggar, Amal M., Yap, Damian, Bashashati, Ali, Nakao, Shoichi, Sorensen, Poul H., Nakanishi, Atsushi, Shah, Sohrab, Aparicio, Samuel
Publicado 2019

Feature-based classifiers for somatic mutation detection in tumour–normal paired sequencing data

por Ding, Jiarui, Bashashati, Ali, Roth, Andrew, Oloumi, Arusha, Tse, Kane, Zeng, Thomas, Haffari, Gholamreza, Hirst, Martin, Marra, Marco A., Condon, Anne, Aparicio, Samuel, Shah, Sohrab P.
Publicado 2012

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data

por Roth, Andrew, Ding, Jiarui, Morin, Ryan, Crisan, Anamaria, Ha, Gavin, Giuliany, Ryan, Bashashati, Ali, Hirst, Martin, Turashvili, Gulisa, Oloumi, Arusha, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Publicado 2012

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

por Ding, Jiarui, McConechy, Melissa K., Horlings, Hugo M., Ha, Gavin, Chun Chan, Fong, Funnell, Tyler, Mullaly, Sarah C., Reimand, Jüri, Bashashati, Ali, Bader, Gary D., Huntsman, David, Aparicio, Samuel, Condon, Anne, Shah, Sohrab P.
Publicado 2015

CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion

por Tien, Jerry F., Mazloomian, Alborz, Cheng, S.-W. Grace, Hughes, Christopher S., Chow, Christalle C.T., Canapi, Leanna T., Oloumi, Arusha, Trigo-Gonzalez, Genny, Bashashati, Ali, Xu, James, Chang, Vicky C.-D., Shah, Sohrab P., Aparicio, Samuel, Morin, Gregg B.
Publicado 2017

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

por Ha, Gavin, Roth, Andrew, Lai, Daniel, Bashashati, Ali, Ding, Jiarui, Goya, Rodrigo, Giuliany, Ryan, Rosner, Jamie, Oloumi, Arusha, Shumansky, Karey, Chin, Suet-Feung, Turashvili, Gulisa, Hirst, Martin, Caldas, Carlos, Marra, Marco A., Aparicio, Samuel, Shah, Sohrab P.
Publicado 2012

Multifocal endometriotic lesions associated with cancer are clonal and carry a high mutation burden

por Anglesio, Michael S, Bashashati, Ali, Wang, Yi Kan, Senz, Janine, Ha, Gavin, Yang, Winnie, Aniba, Mohamed R, Prentice, Leah M, Farahani, Hossein, Li Chang, Hector, Karnezis, Anthony N, Marra, Marco A, Yong, Paul J, Hirst, Martin, Gilks, Blake, Shah, Sohrab P, Huntsman, David G
Publicado 2015

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

por Ha, Gavin, Roth, Andrew, Khattra, Jaswinder, Ho, Julie, Yap, Damian, Prentice, Leah M., Melnyk, Nataliya, McPherson, Andrew, Bashashati, Ali, Laks, Emma, Biele, Justina, Ding, Jiarui, Le, Alan, Rosner, Jamie, Shumansky, Karey, Marra, Marco A., Gilks, C. Blake, Huntsman, David G., McAlpine, Jessica N., Aparicio, Samuel, Shah, Sohrab P.
Publicado 2014

Adult‐type granulosa cell tumor of the ovary: a FOXL2‐centric disease

por Pilsworth, Jessica A, Cochrane, Dawn R, Neilson, Samantha J, Moussavi, Bahar H, Lai, Daniel, Munzur, Aslı D, Senz, Janine, Wang, Yi Kan, Zareian, Sina, Bashashati, Ali, Wong, Adele, Keul, Jacqueline, Staebler, Annette, van Meurs, Hannah S, Horlings, Hugo M, Kommoss, Stefan, Kommoss, Friedrich, Oliva, Esther, Färkkilä, Anniina EM, Gilks, Blake, Huntsman, David G
Publicado 2021

Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling

por Bashashati, Ali, Ha, Gavin, Tone, Alicia, Ding, Jiarui, Prentice, Leah M, Roth, Andrew, Rosner, Jamie, Shumansky, Karey, Kalloger, Steve, Senz, Janine, Yang, Winnie, McConechy, Melissa, Melnyk, Nataliya, Anglesio, Michael, Luk, Margaret TY, Tse, Kane, Zeng, Thomas, Moore, Richard, Zhao, Yongjun, Marra, Marco A, Gilks, Blake, Yip, Stephen, Huntsman, David G, McAlpine, Jessica N, Shah, Sohrab P
Publicado 2013

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups

por Curtis, Christina, Shah, Sohrab P., Chin, Suet-Feung, Turashvili, Gulisa, Rueda, Oscar M., Dunning, Mark J., Speed, Doug, Lynch, Andy G., Samarajiwa, Shamith, Yuan, Yinyin, Gräf, Stefan, Ha, Gavin, Haffari, Gholamreza, Bashashati, Ali, Russell, Roslin, McKinney, Steven, Langerød, Anita, Green, Andrew, Provenzano, Elena, Wishart, Gordon, Pinder, Sarah, Watson, Peter, Markowetz, Florian, Murphy, Leigh, Ellis, Ian, Purushotham, Arnie, Børresen-Dale, Anne-Lise, Brenton, James D., Tavaré, Simon, Caldas, Carlos, Aparicio, Samuel
Publicado 2012

Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study

por Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A., Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D., Johnson, Nathalie A., Sehn, Laurie H., Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M., Scott, David W., Steidl, Christian, Marra, Marco A., Gascoyne, Randy D., Shah, Sohrab P.
Publicado 2016