Piggy: a rapid, large-scale pan-genome analysis tool for intergenic regions in bacteria

por Thorpe, Harry A, Bayliss, Sion C, Sheppard, Samuel K, Feil, Edward J
Publicado 2018

Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials

por Colclough, Abigail, Corander, Jukka, Sheppard, Samuel K., Bayliss, Sion C., Vos, Michiel
Publicado 2019

The use of Oxford Nanopore native barcoding for complete genome assembly

por Bayliss, Sion C, Hunt, Vicky L, Yokoyama, Maho, Thorpe, Harry A, Feil, Edward J
Publicado 2017

PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria

por Bayliss, Sion C, Thorpe, Harry A, Coyle, Nicola M, Sheppard, Samuel K, Feil, Edward J
Publicado 2019

Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning

por Bayliss, Sion C, Locke, Rebecca K, Jenkins, Claire, Chattaway, Marie Anne, Dallman, Timothy J, Cowley, Lauren A
Publicado 2023

Draft Genome Sequences of Salinivibrio proteolyticus, Salinivibrio sharmensis, Salinivibrio siamensis, Salinivibrio costicola subsp. alcaliphilus, Salinivibrio costicola subsp. val...

por López-Hermoso, Clara, de la Haba, Rafael R., Sánchez-Porro, Cristina, Bayliss, Sion C., Feil, Edward J., Ventosa, Antonio
Publicado 2017

The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens

por Bayliss, Sion C., Verner-Jeffreys, David W., Bartie, Kerry L., Aanensen, David M., Sheppard, Samuel K., Adams, Alexandra, Feil, Edward J.
Publicado 2017

Bayesian identification of bacterial strains from sequencing data

por Sankar, Aravind, Malone, Brandon, Bayliss, Sion C., Pascoe, Ben, Méric, Guillaume, Hitchings, Matthew D., Sheppard, Samuel K., Feil, Edward J., Corander, Jukka, Honkela, Antti
Publicado 2016

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry

por Bayliss, Sion C., Verner-Jeffreys, David W., Ryder, David, Suarez, Rudy, Ramirez, Roxana, Romero, Jaime, Pascoe, Ben, Sheppard, Sam K., Godoy, Marcos, Feil, Edward J.
Publicado 2018

A Hopeful Sea-Monster: A Very Large Homologous Recombination Event Impacting the Core Genome of the Marine Pathogen Vibrio anguillarum

por Coyle, Nicola M., Bartie, Kerry L., Bayliss, Sion C., Bekaert, Michaël, Adams, Alexandra, McMillan, Stuart, Verner-Jeffreys, David W., Desbois, Andrew P., Feil, Edward J.
Publicado 2020

Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae

por Comandatore, Francesco, Sassera, Davide, Bayliss, Sion C, Scaltriti, Erika, Gaiarsa, Stefano, Cao, Xiaoli, Gales, Ana C, Saito, Ryoichi, Pongolini, Stefano, Brisse, Sylvain, Feil, Edward J, Bandi, Claudio
Publicado 2019

Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages

por Calland, Jessica K., Pascoe, Ben, Bayliss, Sion C., Mourkas, Evangelos, Berthenet, Elvire, Thorpe, Harry A., Hitchings, Matthew D., Feil, Edward J., Corander, Jukka, Blaser, Martin J., Falush, Daniel, Sheppard, Samuel K.
Publicado 2021

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease

por Mourkas, Evangelos, Florez‐Cuadrado, Diego, Pascoe, Ben, Calland, Jessica K., Bayliss, Sion C., Mageiros, Leonardos, Méric, Guillaume, Hitchings, Matthew D., Quesada, Alberto, Porrero, Concepción, Ugarte‐Ruiz, María, Gutiérrez‐Fernández, José, Domínguez, Lucas, Sheppard, Samuel K.
Publicado 2019

Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon

por Pascoe, Ben, Schiaffino, Francesca, Murray, Susan, Méric, Guillaume, Bayliss, Sion C., Hitchings, Matthew D., Mourkas, Evangelos, Calland, Jessica K., Burga, Rosa, Yori, Pablo Peñataro, Jolley, Keith A., Cooper, Kerry K., Parker, Craig T., Olortegui, Maribel Paredes, Kosek, Margaret N., Sheppard, Samuel K.
Publicado 2020

Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans

por Peters, Stephanie, Pascoe, Ben, Wu, Zuowei, Bayliss, Sion C., Zeng, Ximin, Edwinson, Adam, Veerabadhran-Gurunathan, Sakteesh, Jawahir, Selina, Calland, Jessica K., Mourkas, Evangelos, Patel, Robin, Wiens, Terra, Decuir, Marijke, Boxrud, David, Smith, Kirk, Parker, Craig T., Farrugia, Gianrico, Zhang, Qijing, Sheppard, Samuel K., Grover, Madhusudan
Publicado 2021

Host ecology regulates interspecies recombination in bacteria of the genus Campylobacter

por Mourkas, Evangelos, Yahara, Koji, Bayliss, Sion C, Calland, Jessica K, Johansson, Håkan, Mageiros, Leonardos, Muñoz-Ramirez, Zilia Y, Futcher, Grant, Méric, Guillaume, Hitchings, Matthew D, Sandoval-Motta, Santiago, Torres, Javier, Jolley, Keith A, Maiden, Martin CJ, Ellström, Patrik, Waldenström, Jonas, Pascoe, Ben, Sheppard, Samuel K
Publicado 2022

Genome evolution and the emergence of pathogenicity in avian Escherichia coli

por Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.
Publicado 2021

Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli

por Mageiros, Leonardos, Méric, Guillaume, Bayliss, Sion C., Pensar, Johan, Pascoe, Ben, Mourkas, Evangelos, Calland, Jessica K., Yahara, Koji, Murray, Susan, Wilkinson, Thomas S., Williams, Lisa K., Hitchings, Matthew D., Porter, Jonathan, Kemmett, Kirsty, Feil, Edward J., Jolley, Keith A., Williams, Nicola J., Corander, Jukka, Sheppard, Samuel K.
Publicado 2021

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing

por Senghore, Madikay, Bayliss, Sion C., Kwambana-Adams, Brenda A., Foster-Nyarko, Ebenezer, Manneh, Jainaba, Dione, Michel, Badji, Henry, Ebruke, Chinelo, Doughty, Emma L., Thorpe, Harry A., Jasinska, Anna J., Schmitt, Christopher A., Cramer, Jennifer D., Turner, Trudy R., Weinstock, George, Freimer, Nelson B., Pallen, Mark J., Feil, Edward J., Antonio, Martin
Publicado 2016

Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni

por Mourkas, Evangelos, Taylor, Aidan J., Méric, Guillaume, Bayliss, Sion C., Pascoe, Ben, Mageiros, Leonardos, Calland, Jessica K., Hitchings, Matthew D., Ridley, Anne, Vidal, Ana, Forbes, Ken J., Strachan, Norval J. C., Parker, Craig T., Parkhill, Julian, Jolley, Keith A., Cody, Alison J., Maiden, Martin C. J., Kelly, David J., Sheppard, Samuel K.
Publicado 2020