Tumor Mutational Burden From Tumor-Only Sequencing Compared With Germline Subtraction From Paired Tumor and Normal Specimens

por Parikh, Kaushal, Huether, Robert, White, Kevin, Hoskinson, Derick, Beaubier, Nike, Dong, Haidong, Adjei, Alex A., Mansfield, Aaron S.
Publicado 2020

Genomic characterization of high-risk non-muscle invasive bladder cancer

por Meeks, Joshua J., Carneiro, Benedito A., Pai, Sachin G., Oberlin, Daniel T., Rademaker, Alfred, Fedorchak, Kyle, Balasubramanian, Sohail, Elvin, Julia, Beaubier, Nike, Giles, Francis J.
Publicado 2016

Molecular testing guidelines for lung adenocarcinoma: Utility of cell blocks and concordance between fine-needle aspiration cytology and histology samples

por Heymann, Jonas J., Bulman, William A., Maxfield, Roger A., Powell, Charles A., Halmos, Balazs, Sonett, Joshua, Beaubier, Nike T., Crapanzano, John P., Mansukhani, Mahesh M., Saqi, Anjali
Publicado 2014

Multi-Field-of-View Deep Learning Model Predicts Nonsmall Cell Lung Cancer Programmed Death-Ligand 1 Status from Whole-Slide Hematoxylin and Eosin Images

por Sha, Lingdao, Osinski, Boleslaw L., Ho, Irvin Y., Tan, Timothy L., Willis, Caleb, Weiss, Hannah, Beaubier, Nike, Mahon, Brett M., Taxter, Tim J., Yip, Stephen S. F.
Publicado 2019

Longitudinal Shifts of Solid Tumor and Liquid Biopsy Sequencing Concordance in Metastatic Breast Cancer

por Liu, Minetta C., MacKay, Matthew, Kase, Matthew, Piwowarczyk, Aneta, Lo, Christine, Schaeffer, Jeff, Finkle, Justin D., Mason, Christopher E., Beaubier, Nike, Blackwell, Kimberly L., Park, Ben Ho
Publicado 2022

Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort

por Leibowitz, Benjamin D., Dougherty, Bonnie V., Bell, Joshua S. K., Kapilivsky, Joshuah, Michuda, Jackson, Sedgewick, Andrew J., Munson, Wesley A., Chandra, Tushar A., Dry, Jonathan R., Beaubier, Nike, Igartua, Catherine, Taxter, Timothy
Publicado 2022

Validation of a liquid biopsy assay with molecular and clinical profiling of circulating tumor DNA

por Finkle, Justin D., Boulos, Hala, Driessen, Terri M., Lo, Christine, Blidner, Richard A., Hafez, Ashraf, Khan, Aly A., Lozac’hmeur, Ariane, McKinnon, Kelly E., Perera, Jason, Zhu, Wei, Dowlati, Afshin, White, Kevin P., Tell, Robert, Beaubier, Nike
Publicado 2021

Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin

por Michuda, Jackson, Breschi, Alessandra, Kapilivsky, Joshuah, Manghnani, Kabir, McCarter, Calvin, Hockenberry, Adam J., Mineo, Brittany, Igartua, Catherine, Dudley, Joel T., Stumpe, Martin C., Beaubier, Nike, Shirazi, Maryam, Jones, Ryan, Morency, Elizabeth, Blackwell, Kim, Guinney, Justin, Beauchamp, Kyle A., Taxter, Timothy
Publicado 2023

Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African anc...

por Miyashita, Minoru, Bell, Joshua S. K., Wenric, Stephane, Karaesmen, Ezgi, Rhead, Brooke, Kase, Matthew, Kaneva, Kristiyana, De La Vega, Francisco M., Zheng, Yonglan, Yoshimatsu, Toshio F., Khramtsova, Galina, Liu, Fang, Zhao, Fangyuan, Howard, Frederick M., Nanda, Rita, Beaubier, Nike, White, Kevin P., Huo, Dezheng, Olopade, Olufunmilayo I.
Publicado 2023

Clinical validation of the tempus xT next-generation targeted oncology sequencing assay

por Beaubier, Nike, Tell, Robert, Lau, Denise, Parsons, Jerod R., Bush, Stephen, Perera, Jason, Sorrells, Shelly, Baker, Timothy, Chang, Alan, Michuda, Jackson, Iguartua, Catherine, MacNeil, Shelley, Shah, Kaanan, Ellis, Philip, Yeatts, Kimberly, Mahon, Brett, Taxter, Timothy, Bontrager, Martin, Khan, Aly, Huether, Robert, Lefkofsky, Eric, White, Kevin P.
Publicado 2019

Clinical validation of the Tempus xO assay

por Beaubier, Nike, Tell, Robert, Huether, Robert, Bontrager, Martin, Bush, Stephen, Parsons, Jerod, Shah, Kaanan, Baker, Tim, Selkov, Gene, Taxter, Tim, Thomas, Amber, Bettis, Sam, Khan, Aly, Lau, Denise, Lee, Christina, Barber, Matthew, Cieslik, Marcin, Frankenberger, Casey, Franzen, Amy, Weiner, Ali, Palmer, Gary, Lonigro, Robert, Robinson, Dan, Wu, Yi-Mi, Cao, Xuhong, Lefkofsky, Eric, Chinnaiyan, Arul, White, Kevin P.
Publicado 2018

Homologous Recombination Deficiency: Concepts, Definitions, and Assays

por Stewart, Mark D, Merino Vega, Diana, Arend, Rebecca C, Baden, Jonathan F, Barbash, Olena, Beaubier, Nike, Collins, Grace, French, Tim, Ghahramani, Negar, Hinson, Patsy, Jelinic, Petar, Marton, Matthew J, McGregor, Kimberly, Parsons, Jerod, Ramamurthy, Lakshman, Sausen, Mark, Sokol, Ethan S, Stenzinger, Albrecht, Stires, Hillary, Timms, Kirsten M, Turco, Diana, Wang, Iris, Williams, J Andrew, Wong-Ho, Elaine, Allen, Jeff
Publicado 2022

Very low mutation burden is a feature of inflamed recurrent glioblastomas responsive to cancer immunotherapy

por Gromeier, Matthias, Brown, Michael C., Zhang, Gao, Lin, Xiang, Chen, Yeqing, Wei, Zhi, Beaubier, Nike, Yan, Hai, He, Yiping, Desjardins, Annick, Herndon, James E., Varn, Frederick S., Verhaak, Roel G., Zhao, Junfei, Bolognesi, Dani P., Friedman, Allan H., Friedman, Henry S., McSherry, Frances, Muscat, Andrea M., Lipp, Eric S., Nair, Smita K., Khasraw, Mustafa, Peters, Katherine B., Randazzo, Dina, Sampson, John H., McLendon, Roger E., Bigner, Darell D., Ashley, David M.
Publicado 2021

Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States

por Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Fauntleroy, Kathy A., Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., George, Kirsten St., MacCannell, Duncan R., Grubaugh, Nathan D.
Publicado 2021

Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States

por Alpert, Tara, Brito, Anderson F., Lasek-Nesselquist, Erica, Rothman, Jessica, Valesano, Andrew L., MacKay, Matthew J., Petrone, Mary E., Breban, Mallery I., Watkins, Anne E., Vogels, Chantal B.F., Kalinich, Chaney C., Dellicour, Simon, Russell, Alexis, Kelly, John P., Shudt, Matthew, Plitnick, Jonathan, Schneider, Erasmus, Fitzsimmons, William J., Khullar, Gaurav, Metti, Jessica, Dudley, Joel T., Nash, Megan, Beaubier, Nike, Wang, Jianhui, Liu, Chen, Hui, Pei, Muyombwe, Anthony, Downing, Randy, Razeq, Jafar, Bart, Stephen M., Grills, Ardath, Morrison, Stephanie M., Murphy, Steven, Neal, Caleb, Laszlo, Eva, Rennert, Hanna, Cushing, Melissa, Westblade, Lars, Velu, Priya, Craney, Arryn, Cong, Lin, Peaper, David R., Landry, Marie L., Cook, Peter W., Fauver, Joseph R., Mason, Christopher E., Lauring, Adam S., St. George, Kirsten, MacCannell, Duncan R., Grubaugh, Nathan D.
Publicado 2021