Learning Contextual Hierarchical Structure of Medical Concepts with Poincairé Embeddings to Clarify Phenotypes

por Beaulieu-Jones, Brett K., Kohane, Isaac S., Beam, Andrew L.
Publicado 2019

Illustrating potential effects of alternate control populations on real-world evidence-based statistical analyses

por Huang, Yidi, Yuan, William, Kohane, Isaac S, Beaulieu-Jones, Brett K
Publicado 2021

Machine learning for patient risk stratification: standing on, or looking over, the shoulders of clinicians?

por Beaulieu-Jones, Brett K., Yuan, William, Brat, Gabriel A., Beam, Andrew L., Weber, Griffin, Ruffin, Marshall, Kohane, Isaac S.
Publicado 2021

Characterizing and Managing Missing Structured Data in Electronic Health Records: Data Analysis

por Beaulieu-Jones, Brett K, Lavage, Daniel R, Snyder, John W, Moore, Jason H, Pendergrass, Sarah A, Bauer, Christopher R
Publicado 2018

Privacy-Preserving Generative Deep Neural Networks Support Clinical Data Sharing

por Beaulieu-Jones, Brett K., Wu, Zhiwei Steven, Williams, Chris, Lee, Ran, Bhavnani, Sanjeev P., Byrd, James Brian, Greene, Casey S.
Publicado 2019

Examining the Use of Real‐World Evidence in the Regulatory Process

por Beaulieu‐Jones, Brett K., Finlayson, Samuel G., Yuan, William, Altman, Russ B., Kohane, Isaac S., Prasad, Vinay, Yu, Kun‐Hsing
Publicado 2019

Temporal bias in case-control design: preventing reliable predictions of the future

por Yuan, William, Beaulieu-Jones, Brett K., Yu, Kun-Hsing, Lipnick, Scott L., Palmer, Nathan, Loscalzo, Joseph, Cai, Tianxi, Kohane, Isaac S.
Publicado 2021

Predicting seizure recurrence after an initial seizure-like episode from routine clinical notes using large language models: a retrospective cohort study

por Beaulieu-Jones, Brett K, Villamar, Mauricio F, Scordis, Phil, Bartmann, Ana Paula, Ali, Waqar, Wissel, Benjamin D, Alsentzer, Emily, de Jong, Johann, Patra, Arijit, Kohane, Isaac
Publicado 2023

Multi-center retrospective cohort study applying deep learning to electrocardiograms to identify left heart valvular dysfunction

por Vaid, Akhil, Argulian, Edgar, Lerakis, Stamatios, Beaulieu-Jones, Brett K., Krittanawong, Chayakrit, Klang, Eyal, Lampert, Joshua, Reddy, Vivek Y., Narula, Jagat, Nadkarni, Girish N., Glicksberg, Benjamin S.
Publicado 2023

Generate Analysis-Ready Data for Real-world Evidence: Tutorial for Harnessing Electronic Health Records With Advanced Informatic Technologies

por Hou, Jue, Zhao, Rachel, Gronsbell, Jessica, Lin, Yucong, Bonzel, Clara-Lea, Zeng, Qingyi, Zhang, Sinian, Beaulieu-Jones, Brett K, Weber, Griffin M, Jemielita, Thomas, Wan, Shuyan Sabrina, Hong, Chuan, Cai, Tianrun, Wen, Jun, Ayakulangara Panickan, Vidul, Liaw, Kai-Li, Liao, Katherine, Cai, Tianxi
Publicado 2023

Multinational Prevalence of Neurological Phenotypes in Patients Hospitalized with COVID-19

por Le, Trang T., Gutiérrez-Sacristán, Alba, Son, Jiyeon, Hong, Chuan, South, Andrew M., Beaulieu-Jones, Brett K., Loh, Ne Hooi Will, Luo, Yuan, Morris, Michele, Ngiam, Kee Yuan, Patel, Lav P., Samayamuthu, Malarkodi J., Schriver, Emily, Tan, Amelia LM, Moore, Jason, Cai, Tianxi, Omenn, Gilbert S., Avillach, Paul, Kohane, Isaac S., Visweswaran, Shyam, Mowery, Danielle L., Xia, Zongqi
Publicado 2021

Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19

por Le, Trang T., Gutiérrez-Sacristán, Alba, Son, Jiyeon, Hong, Chuan, South, Andrew M., Beaulieu-Jones, Brett K., Loh, Ne Hooi Will, Luo, Yuan, Morris, Michele, Ngiam, Kee Yuan, Patel, Lav P., Samayamuthu, Malarkodi J., Schriver, Emily, Tan, Amelia L. M., Moore, Jason, Cai, Tianxi, Omenn, Gilbert S., Avillach, Paul, Kohane, Isaac S., Visweswaran, Shyam, Mowery, Danielle L., Xia, Zongqi
Publicado 2021

Opportunities and obstacles for deep learning in biology and medicine

por Ching, Travers, Himmelstein, Daniel S., Beaulieu-Jones, Brett K., Kalinin, Alexandr A., Do, Brian T., Way, Gregory P., Ferrero, Enrico, Agapow, Paul-Michael, Zietz, Michael, Hoffman, Michael M., Xie, Wei, Rosen, Gail L., Lengerich, Benjamin J., Israeli, Johnny, Lanchantin, Jack, Woloszynek, Stephen, Carpenter, Anne E., Shrikumar, Avanti, Xu, Jinbo, Cofer, Evan M., Lavender, Christopher A., Turaga, Srinivas C., Alexandari, Amr M., Lu, Zhiyong, Harris, David J., DeCaprio, Dave, Qi, Yanjun, Kundaje, Anshul, Peng, Yifan, Wiley, Laura K., Segler, Marwin H. S., Boca, Simina M., Swamidass, S. Joshua, Huang, Austin, Gitter, Anthony, Greene, Casey S.
Publicado 2018

What Every Reader Should Know About Studies Using Electronic Health Record Data but May Be Afraid to Ask

por Kohane, Isaac S, Aronow, Bruce J, Avillach, Paul, Beaulieu-Jones, Brett K, Bellazzi, Riccardo, Bradford, Robert L, Brat, Gabriel A, Cannataro, Mario, Cimino, James J, García-Barrio, Noelia, Gehlenborg, Nils, Ghassemi, Marzyeh, Gutiérrez-Sacristán, Alba, Hanauer, David A, Holmes, John H, Hong, Chuan, Klann, Jeffrey G, Loh, Ne Hooi Will, Luo, Yuan, Mandl, Kenneth D, Daniar, Mohamad, Moore, Jason H, Murphy, Shawn N, Neuraz, Antoine, Ngiam, Kee Yuan, Omenn, Gilbert S, Palmer, Nathan, Patel, Lav P, Pedrera-Jiménez, Miguel, Sliz, Piotr, South, Andrew M, Tan, Amelia Li Min, Taylor, Deanne M, Taylor, Bradley W, Torti, Carlo, Vallejos, Andrew K, Wagholikar, Kavishwar B, Weber, Griffin M, Cai, Tianxi
Publicado 2021

Validation of an Internationally Derived Patient Severity Phenotype to Support COVID-19 Analytics from Electronic Health Record Data

por Klann, Jeffrey G, Weber, Griffin M, Estiri, Hossein, Moal, Bertrand, Avillach, Paul, Hong, Chuan, Castro, Victor, Maulhardt, Thomas, Tan, Amelia L M, Geva, Alon, Beaulieu-Jones, Brett K, Malovini, Alberto, South, Andrew M, Visweswaran, Shyam, Omenn, Gilbert S, Ngiam, Kee Yuan, Mandl, Kenneth D, Boeker, Martin, Olson, Karen L, Mowery, Danielle L, Morris, Michele, Follett, Robert W, Hanauer, David A, Bellazzi, Riccardo, Moore, Jason H, Loh, Ne-Hooi Will, Bell, Douglas S, Wagholikar, Kavishwar B, Chiovato, Luca, Tibollo, Valentina, Rieg, Siegbert, Li, Anthony L L J, Jouhet, Vianney, Schriver, Emily, Samayamuthu, Malarkodi J, Xia, Zongqi, Hutch, Meghan, Luo, Yuan, Kohane, Isaac S, Brat, Gabriel A, Murphy, Shawn N
Publicado 2021

International comparisons of laboratory values from the 4CE collaborative to predict COVID-19 mortality

por Weber, Griffin M., Hong, Chuan, Xia, Zongqi, Palmer, Nathan P., Avillach, Paul, L’Yi, Sehi, Keller, Mark S., Murphy, Shawn N., Gutiérrez-Sacristán, Alba, Bonzel, Clara-Lea, Serret-Larmande, Arnaud, Neuraz, Antoine, Omenn, Gilbert S., Visweswaran, Shyam, Klann, Jeffrey G., South, Andrew M., Loh, Ne Hooi Will, Cannataro, Mario, Beaulieu-Jones, Brett K., Bellazzi, Riccardo, Agapito, Giuseppe, Alessiani, Mario, Aronow, Bruce J., Bell, Douglas S., Benoit, Vincent, Bourgeois, Florence T., Chiovato, Luca, Cho, Kelly, Dagliati, Arianna, DuVall, Scott L., Barrio, Noelia García, Hanauer, David A., Ho, Yuk-Lam, Holmes, John H., Issitt, Richard W., Liu, Molei, Luo, Yuan, Lynch, Kristine E., Maidlow, Sarah E., Malovini, Alberto, Mandl, Kenneth D., Mao, Chengsheng, Matheny, Michael E., Moore, Jason H., Morris, Jeffrey S., Morris, Michele, Mowery, Danielle L., Ngiam, Kee Yuan, Patel, Lav P., Pedrera-Jimenez, Miguel, Ramoni, Rachel B., Schriver, Emily R., Schubert, Petra, Balazote, Pablo Serrano, Spiridou, Anastasia, Tan, Amelia L. M., Tan, Byorn W. L., Tibollo, Valentina, Torti, Carlo, Trecarichi, Enrico M., Wang, Xuan, Kohane, Isaac S., Cai, Tianxi, Brat, Gabriel A.
Publicado 2022

Changes in laboratory value improvement and mortality rates over the course of the pandemic: an international retrospective cohort study of hospitalised patients infected with SARS...

por Hong, Chuan, Zhang, Harrison G, L'Yi, Sehi, Weber, Griffin, Avillach, Paul, Tan, Bryce W Q, Gutiérrez-Sacristán, Alba, Bonzel, Clara-Lea, Palmer, Nathan P, Malovini, Alberto, Tibollo, Valentina, Luo, Yuan, Hutch, Meghan R, Liu, Molei, Bourgeois, Florence, Bellazzi, Riccardo, Chiovato, Luca, Sanz Vidorreta, Fernando J, Le, Trang T, Wang, Xuan, Yuan, William, Neuraz, Antoine, Benoit, Vincent, Moal, Bertrand, Morris, Michele, Hanauer, David A, Maidlow, Sarah, Wagholikar, Kavishwar, Murphy, Shawn, Estiri, Hossein, Makoudjou, Adeline, Tippmann, Patric, Klann, Jeffery, Follett, Robert W, Gehlenborg, Nils, Omenn, Gilbert S, Xia, Zongqi, Dagliati, Arianna, Visweswaran, Shyam, Patel, Lav P, Mowery, Danielle L, Schriver, Emily R, Samayamuthu, Malarkodi Jebathilagam, Kavuluru, Ramakanth, Lozano-Zahonero, Sara, Zöller, Daniela, Tan, Amelia L M, Tan, Byorn W L, Ngiam, Kee Yuan, Holmes, John H, Schubert, Petra, Cho, Kelly, Ho, Yuk-Lam, Beaulieu-Jones, Brett K., Pedrera-Jiménez, Miguel, García-Barrio, Noelia, Serrano-Balazote, Pablo, Kohane, Isaac, South, Andrew, Brat, Gabriel A, Cai, Tianxi
Publicado 2022

International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium

por Brat, Gabriel A., Weber, Griffin M., Gehlenborg, Nils, Avillach, Paul, Palmer, Nathan P., Chiovato, Luca, Cimino, James, Waitman, Lemuel R., Omenn, Gilbert S., Malovini, Alberto, Moore, Jason H., Beaulieu-Jones, Brett K., Tibollo, Valentina, Murphy, Shawn N., Yi, Sehi L’, Keller, Mark S., Bellazzi, Riccardo, Hanauer, David A., Serret-Larmande, Arnaud, Gutierrez-Sacristan, Alba, Holmes, John J., Bell, Douglas S., Mandl, Kenneth D., Follett, Robert W., Klann, Jeffrey G., Murad, Douglas A., Scudeller, Luigia, Bucalo, Mauro, Kirchoff, Katie, Craig, Jean, Obeid, Jihad, Jouhet, Vianney, Griffier, Romain, Cossin, Sebastien, Moal, Bertrand, Patel, Lav P., Bellasi, Antonio, Prokosch, Hans U., Kraska, Detlef, Sliz, Piotr, Tan, Amelia L. M., Ngiam, Kee Yuan, Zambelli, Alberto, Mowery, Danielle L., Schiver, Emily, Devkota, Batsal, Bradford, Robert L., Daniar, Mohamad, Daniel, Christel, Benoit, Vincent, Bey, Romain, Paris, Nicolas, Serre, Patricia, Orlova, Nina, Dubiel, Julien, Hilka, Martin, Jannot, Anne Sophie, Breant, Stephane, Leblanc, Judith, Griffon, Nicolas, Burgun, Anita, Bernaux, Melodie, Sandrin, Arnaud, Salamanca, Elisa, Cormont, Sylvie, Ganslandt, Thomas, Gradinger, Tobias, Champ, Julien, Boeker, Martin, Martel, Patricia, Esteve, Loic, Gramfort, Alexandre, Grisel, Olivier, Leprovost, Damien, Moreau, Thomas, Varoquaux, Gael, Vie, Jill-Jênn, Wassermann, Demian, Mensch, Arthur, Caucheteux, Charlotte, Haverkamp, Christian, Lemaitre, Guillaume, Bosari, Silvano, Krantz, Ian D., South, Andrew, Cai, Tianxi, Kohane, Isaac S.
Publicado 2020

International Comparisons of Harmonized Laboratory Value Trajectories to Predict Severe COVID-19: Leveraging the 4CE Collaborative Across 342 Hospitals and 6 Countries: A Retrospec...

por Weber, Griffin M, Hong, Chuan, Palmer, Nathan P, Avillach, Paul, Murphy, Shawn N, Gutiérrez-Sacristán, Alba, Xia, Zongqi, Serret-Larmande, Arnaud, Neuraz, Antoine, Omenn, Gilbert S., Visweswaran, Shyam, Klann, Jeffrey G, South, Andrew M, Loh, Ne Hooi Will, Cannataro, Mario, Beaulieu-Jones, Brett K, Bellazzi, Riccardo, Agapito, Giuseppe, Alessiani, Mario, Aronow, Bruce J, Bell, Douglas S, Bellasi, Antonio, Benoit, Vincent, Beraghi, Michele, Boeker, Martin, Booth, John, Bosari, Silvano, Bourgeois, Florence T, Brown, Nicholas W, Bucalo, Mauro, Chiovato, Luca, Chiudinelli, Lorenzo, Dagliati, Arianna, Devkota, Batsal, DuVall, Scott L, Follett, Robert W, Ganslandt, Thomas, García Barrio, Noelia, Gradinger, Tobias, Griffier, Romain, Hanauer, David A, Holmes, John H, Horki, Petar, Huling, Kenneth M, Issitt, Richard W, Jouhet, Vianney, Keller, Mark S, Kraska, Detlef, Liu, Molei, Luo, Yuan, Lynch, Kristine E, Malovini, Alberto, Mandl, Kenneth D, Mao, Chengsheng, Maram, Anupama, Matheny, Michael E, Maulhardt, Thomas, Mazzitelli, Maria, Milano, Marianna, Moore, Jason H, Morris, Jeffrey S, Morris, Michele, Mowery, Danielle L, Naughton, Thomas P, Ngiam, Kee Yuan, Norman, James B, Patel, Lav P, Pedrera Jimenez, Miguel, Ramoni, Rachel B, Schriver, Emily R, Scudeller, Luigia, Sebire, Neil J, Serrano Balazote, Pablo, Spiridou, Anastasia, Tan, Amelia LM, Tan, Byorn WL, Tibollo, Valentina, Torti, Carlo, Trecarichi, Enrico M, Vitacca, Michele, Zambelli, Alberto, Zucco, Chiara, Kohane, Isaac S, Cai, Tianxi, Brat, Gabriel A
Publicado 2021