A System of RNA Modifications and Biased Codon Use Controls Cellular Stress Response at the Level of Translation

por Dedon, Peter C., Begley, Thomas J.
Publicado 2014

Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses

por Chan, Cheryl, Pham, Phuong, Dedon, Peter C., Begley, Thomas J.
Publicado 2018

Sulfur modification in natural RNA and therapeutic oligonucleotides

por Zheng, Ya Ying, Wu, Ying, Begley, Thomas J., Sheng, Jia
Publicado 2021

The gene-specific codon counting database: a genome-based catalog of one-, two-, three-, four- and five-codon combinations present in Saccharomyces cerevisiae genes

por Tumu, Sudheer, Patil, Ashish, Towns, William, Dyavaiah, Madhu, Begley, Thomas J.
Publicado 2012

tRNA Modification Detection Using Graphene Nanopores: A Simulation Study

por Onanuga, Khadijah, Begley, Thomas J., Chen, Alan A., Ranganathan, Srivathsan V.
Publicado 2017

The Versatile Roles of the tRNA Epitranscriptome during Cellular Responses to Toxic Exposures and Environmental Stress

por Huber, Sabrina M., Leonardi, Andrea, Dedon, Peter C., Begley, Thomas J.
Publicado 2019

Loss of epitranscriptomic control of selenocysteine utilization engages senescence and mitochondrial reprogramming

por Lee, May Y., Leonardi, Andrea, Begley, Thomas J., Melendez, J. Andrés
Publicado 2019

Phosphorylation of human TRM9L integrates multiple stress-signaling pathways for tumor growth suppression

por Gu, Chen, Ramos, Jillian, Begley, Ulrike, Dedon, Peter C., Fu, Dragony, Begley, Thomas J.
Publicado 2018

Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation

por Deng, Wenjun, Babu, I. Ramesh, Su, Dan, Yin, Shanye, Begley, Thomas J., Dedon, Peter C.
Publicado 2015

A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress

por Chan, Clement T. Y., Dyavaiah, Madhu, DeMott, Michael S., Taghizadeh, Koli, Dedon, Peter C., Begley, Thomas J.
Publicado 2010

Correction: A Quantitative Systems Approach Reveals Dynamic Control of tRNA Modifications during Cellular Stress

por Chan, Clement T. Y., Dyavaiah, Madhu, DeMott, Michael S., Taghizadeh, Koli, Dedon, Peter C., Begley, Thomas J.
Publicado 2011

Anc1, a Protein Associated with Multiple Transcription Complexes, Is Involved in Postreplication Repair Pathway in S. cerevisiae

por Erlich, Rachel L., Fry, Rebecca C., Begley, Thomas J., Daee, Danielle L., Lahue, Robert S., Samson, Leona D.
Publicado 2008

Dengue virus exploits the host tRNA epitranscriptome to promote viral replication

por Chan, Cheryl, Kwan Sze, Newman Siu, Suzuki, Yuka, Ohira, Takayuki, Suzuki, Tsutomu, Begley, Thomas J., Dedon, Peter C.
Publicado 2023

The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA

por Fry, Rebecca C, DeMott, Michael S, Cosgrove, Joseph P, Begley, Thomas J, Samson, Leona D, Dedon, Peter C
Publicado 2006

Transcriptional Networks in S. cerevisiae Linked to an Accumulation of Base Excision Repair Intermediates

por Rusyn, Ivan, Fry, Rebecca C., Begley, Thomas J., Klapacz, Joanna, Svensson, J. Peter, Ambrose, Mark, Samson, Leona D.
Publicado 2007

A Proteomics Approach to Profiling the Temporal Translational Response to Stress and Growth

por Rothenberg, Daniel A., Taliaferro, J. Matthew, Huber, Sabrina M., Begley, Thomas J., Dedon, Peter C., White, Forest M.
Publicado 2018

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes

por Chan, Clement T. Y., Deng, Wenjun, Li, Fugen, DeMott, Michael S., Babu, I. Ramesh, Begley, Thomas J., Dedon, Peter C.
Publicado 2015

Reprogramming of tRNA modifications controls the oxidative stress response by codon-biased translation of proteins

por Chan, Clement T.Y., Pang, Yan Ling Joy, Deng, Wenjun, Babu, I. Ramesh, Dyavaiah, Madhu, Begley, Thomas J., Dedon, Peter C.
Publicado 2012

Alkbh8 Regulates Selenocysteine-Protein Expression to Protect against Reactive Oxygen Species Damage

por Endres, Lauren, Begley, Ulrike, Clark, Ryan, Gu, Chen, Dziergowska, Agnieszka, Małkiewicz, Andrzej, Melendez, J. Andres, Dedon, Peter C., Begley, Thomas J.
Publicado 2015

Arsenite toxicity is regulated by queuine availability and oxidation-induced reprogramming of the human tRNA epitranscriptome

por Huber, Sabrina M., Begley, Ulrike, Sarkar, Anwesha, Gasperi, William, Davis, Evan T., Surampudi, Vasudha, Lee, May, Melendez, J. Andres, Dedon, Peter C., Begley, Thomas J.
Publicado 2022