Predicting transcription factor binding using ensemble random forest models

por Behjati Ardakani, Fatemeh, Schmidt, Florian, Schulz, Marcel H.
Publicado 2019

The adapted Activity-By-Contact model for enhancer–gene assignment and its application to single-cell data

por Hecker, Dennis, Behjati Ardakani, Fatemeh, Karollus, Alexander, Gagneur, Julien, Schulz, Marcel H
Publicado 2023

Prediction of single-cell gene expression for transcription factor analysis

por Behjati Ardakani, Fatemeh, Kattler, Kathrin, Heinen, Tobias, Schmidt, Florian, Feuerborn, David, Gasparoni, Gilles, Lepikhov, Konstantin, Nell, Patrick, Hengstler, Jan, Walter, Jörn, Schulz, Marcel H
Publicado 2020

Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters

por Behjati Ardakani, Fatemeh, Kattler, Kathrin, Nordström, Karl, Gasparoni, Nina, Gasparoni, Gilles, Fuchs, Sarah, Sinha, Anupam, Barann, Matthias, Ebert, Peter, Fischer, Jonas, Hutter, Barbara, Zipprich, Gideon, Imbusch, Charles D., Felder, Bärbel, Eils, Jürgen, Brors, Benedikt, Lengauer, Thomas, Manke, Thomas, Rosenstiel, Philip, Walter, Jörn, Schulz, Marcel H.
Publicado 2018

Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction

por Schmidt, Florian, Gasparoni, Nina, Gasparoni, Gilles, Gianmoena, Kathrin, Cadenas, Cristina, Polansky, Julia K., Ebert, Peter, Nordström, Karl, Barann, Matthias, Sinha, Anupam, Fröhler, Sebastian, Xiong, Jieyi, Dehghani Amirabad, Azim, Behjati Ardakani, Fatemeh, Hutter, Barbara, Zipprich, Gideon, Felder, Bärbel, Eils, Jürgen, Brors, Benedikt, Chen, Wei, Hengstler, Jan G., Hamann, Alf, Lengauer, Thomas, Rosenstiel, Philip, Walter, Jörn, Schulz, Marcel H.
Publicado 2017