Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm

por Magi, Alberto, Benelli, Matteo, Yoon, Seungtai, Roviello, Franco, Torricelli, Francesca
Publicado 2011

WNP: A Novel Algorithm for Gene Products Annotation from Weighted Functional Networks

por Magi, Alberto, Tattini, Lorenzo, Benelli, Matteo, Giusti, Betti, Abbate, Rosanna, Ruffo, Stefano
Publicado 2012

Bioinformatics for Next Generation Sequencing Data

por Magi, Alberto, Benelli, Matteo, Gozzini, Alessia, Girolami, Francesca, Torricelli, Francesca, Brandi, Maria Luisa
Publicado 2010

Exome sequencing in primary melanoma identifies novel drivers of melanoma progression

por Montagnani, Valentina, Benelli, Matteo, Apollo, Alessandro, Pandolfi, Silvia, Gerlini, Gianni, Borgognoni, Lorenzo, Stecca, Barbara
Publicado 2015

PIK3CA co-occurring mutations and copy-number gain in hormone receptor positive and HER2 negative breast cancer

por Migliaccio, Ilenia, Paoli, Marta, Risi, Emanuela, Biagioni, Chiara, Biganzoli, Laura, Benelli, Matteo, Malorni, Luca
Publicado 2022

Charting differentially methylated regions in cancer with Rocker-meth

por Benelli, Matteo, Franceschini, Gian Marco, Magi, Alberto, Romagnoli, Dario, Biagioni, Chiara, Migliaccio, Ilenia, Malorni, Luca, Demichelis, Francesca
Publicado 2021

Thin and thick primary cutaneous melanomas reveal distinct patterns of somatic copy number alterations

por Montagnani, Valentina, Benelli, Matteo, Apollo, Alessandro, Pescucci, Chiara, Licastro, Danilo, Urso, Carmelo, Gerlini, Gianni, Borgognoni, Lorenzo, Luzzatto, Lucio, Stecca, Barbara
Publicado 2016

Metabolomics to Assess Response to Immune Checkpoint Inhibitors in Patients with Non-Small-Cell Lung Cancer

por Ghini, Veronica, Laera, Letizia, Fantechi, Beatrice, del Monte, Francesca, Benelli, Matteo, McCartney, Amelia, Tenori, Leonardo, Luchinat, Claudio, Pozzessere, Daniele
Publicado 2020

Circulating Biomarkers of CDK4/6 Inhibitors Response in Hormone Receptor Positive and HER2 Negative Breast Cancer

por Migliaccio, Ilenia, Leo, Angela, Galardi, Francesca, Guarducci, Cristina, Fusco, Giulio Maria, Benelli, Matteo, Di Leo, Angelo, Biganzoli, Laura, Malorni, Luca
Publicado 2021

Cell-Free DNA-Methylation-Based Methods and Applications in Oncology

por Galardi, Francesca, De Luca, Francesca, Romagnoli, Dario, Biagioni, Chiara, Moretti, Erica, Biganzoli, Laura, Di Leo, Angelo, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo
Publicado 2020

Sphingosine 1-Phosphate Induces Differentiation of Mesoangioblasts towards Smooth Muscle. A Role for GATA6

por Donati, Chiara, Marseglia, Giuseppina, Magi, Alberto, Serratì, Simona, Cencetti, Francesca, Bernacchioni, Caterina, Nannetti, Genni, Benelli, Matteo, Brunelli, Silvia, Torricelli, Francesca, Cossu, Giulio, Bruni, Paola
Publicado 2011

A novel brain tumour model in zebrafish reveals the role of YAP activation in MAPK- and PI3K-induced malignant growth

por Mayrhofer, Marie, Gourain, Victor, Reischl, Markus, Affaticati, Pierre, Jenett, Arnim, Joly, Jean-Stephane, Benelli, Matteo, Demichelis, Francesca, Poliani, Pietro Luigi, Sieger, Dirk, Mione, Marina
Publicado 2017

ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data

por Romagnoli, Dario, Boccalini, Giulia, Bonechi, Martina, Biagioni, Chiara, Fassan, Paola, Bertorelli, Roberto, Sanctis, Veronica De, Leo, Angelo Di, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo
Publicado 2018

Contemporary genetic testing in inherited cardiac disease: tools, ethical issues, and clinical applications

por Girolami, Francesca, Frisso, Giulia, Benelli, Matteo, Crotti, Lia, Iascone, Maria, Mango, Ruggiero, Mazzaccara, Cristina, Pilichou, Kalliope, Arbustini, Eloisa, Tomberli, Benedetta, Limongelli, Giuseppe, Basso, Cristina, Olivotto, Iacopo
Publicado 2018

Tumor Necrosis Factor α Influences Phenotypic Plasticity and Promotes Epigenetic Changes in Human Basal Forebrain Cholinergic Neuroblasts

por Guarnieri, Giulia, Sarchielli, Erica, Comeglio, Paolo, Herrera-Puerta, Erika, Piaceri, Irene, Nacmias, Benedetta, Benelli, Matteo, Kelsey, Gavin, Maggi, Mario, Gallina, Pasquale, Vannelli, Gabriella Barbara, Morelli, Annamaria
Publicado 2020

Allele-specific genomic data elucidate the role of somatic gain and copy-number neutral loss of heterozygosity in cancer

por Ciani, Yari, Fedrizzi, Tarcisio, Prandi, Davide, Lorenzin, Francesca, Locallo, Alessio, Gasperini, Paola, Franceschini, Gian Marco, Benelli, Matteo, Elemento, Olivier, Fava, Luca L., Inga, Alberto, Demichelis, Francesca
Publicado 2022

A Systematic Assessment of Accuracy in Detecting Somatic Mosaic Variants by Deep Amplicon Sequencing: Application to NF2 Gene

por Contini, Elisa, Paganini, Irene, Sestini, Roberta, Candita, Luisa, Capone, Gabriele Lorenzo, Barbetti, Lorenzo, Falconi, Serena, Frusconi, Sabrina, Giotti, Irene, Giuliani, Costanza, Torricelli, Francesca, Benelli, Matteo, Papi, Laura
Publicado 2015

LEADeR role of miR-205 host gene as long noncoding RNA in prostate basal cell differentiation

por Profumo, Valentina, Forte, Barbara, Percio, Stefano, Rotundo, Federica, Doldi, Valentina, Ferrari, Elena, Fenderico, Nicola, Dugo, Matteo, Romagnoli, Dario, Benelli, Matteo, Valdagni, Riccardo, Dolfini, Diletta, Zaffaroni, Nadia, Gandellini, Paolo
Publicado 2019

Mechanisms of Resistance to CDK4/6 Inhibitors: Potential Implications and Biomarkers for Clinical Practice

por McCartney, Amelia, Migliaccio, Ilenia, Bonechi, Martina, Biagioni, Chiara, Romagnoli, Dario, De Luca, Francesca, Galardi, Francesca, Risi, Emanuela, De Santo, Irene, Benelli, Matteo, Malorni, Luca, Di Leo, Angelo
Publicado 2019

Glucose Metabolic Reprogramming of ER(+) Breast Cancer in Acquired Resistance to the CDK4/6 Inhibitor Palbociclib

por Lorito, Nicla, Bacci, Marina, Smiriglia, Alfredo, Mannelli, Michele, Parri, Matteo, Comito, Giuseppina, Ippolito, Luigi, Giannoni, Elisa, Bonechi, Martina, Benelli, Matteo, Migliaccio, Ilenia, Malorni, Luca, Chiarugi, Paola, Morandi, Andrea
Publicado 2020