New Challenges to Study Heterogeneity in Cancer Redox Metabolism

por Benfeitas, Rui, Uhlen, Mathias, Nielsen, Jens, Mardinoglu, Adil
Publicado 2017

Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons

por Bauer, Susanne, Dittrich, Lars, Kaczmarczyk, Lech, Schleif, Melvin, Benfeitas, Rui, Jackson, Walker S
Publicado 2022

Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling

por Rosario, Dorines, Benfeitas, Rui, Bidkhori, Gholamreza, Zhang, Cheng, Uhlen, Mathias, Shoaie, Saeed, Mardinoglu, Adil
Publicado 2018

ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling

por Zhang, Cheng, Bidkhori, Gholamreza, Benfeitas, Rui, Lee, Sunjae, Arif, Muhammad, Uhlén, Mathias, Mardinoglu, Adil
Publicado 2018

Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning

por Mohammadi, Elyas, Benfeitas, Rui, Turkez, Hasan, Boren, Jan, Nielsen, Jens, Uhlen, Mathias, Mardinoglu, Adil
Publicado 2020

Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning

por Turanli, Beste, Zhang, Cheng, Kim, Woonghee, Benfeitas, Rui, Uhlen, Mathias, Arga, Kazim Yalcin, Mardinoglu, Adil
Publicado 2019

Serum immuno-oncology markers carry independent prognostic information in patients with newly diagnosed metastatic breast cancer, from a prospective observational study

por Gunnarsdottir, Frida Björk, Bendahl, Pär-Ola, Johansson, Alexandra, Benfeitas, Rui, Rydén, Lisa, Bergenfelz, Caroline, Larsson, Anna-Maria
Publicado 2023

Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma

por Bidkhori, Gholamreza, Benfeitas, Rui, Elmas, Ezgi, Kararoudi, Meisam Naeimi, Arif, Muhammad, Uhlen, Mathias, Nielsen, Jens, Mardinoglu, Adil
Publicado 2018

Genome-scale metabolic models for natural and long-term drug-induced viral control in HIV infection

por Ambikan, Anoop T, Svensson-Akusjärvi, Sara, Krishnan, Shuba, Sperk, Maike, Nowak, Piotr, Vesterbacka, Jan, Sönnerborg, Anders, Benfeitas, Rui, Neogi, Ujjwal
Publicado 2022

Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer’s and Parkinson’s Diseases

por Lam, Simon, Hartmann, Nils, Benfeitas, Rui, Zhang, Cheng, Arif, Muhammad, Turkez, Hasan, Uhlén, Mathias, Englert, Christoph, Knight, Robert, Mardinoglu, Adil
Publicado 2021

Integrative Lipidomics and Metabolomics for System-Level Understanding of the Metabolic Syndrome in Long-Term Treated HIV-Infected Individuals

por Olund Villumsen, Sofie, Benfeitas, Rui, Knudsen, Andreas Dehlbæk, Gelpi, Marco, Høgh, Julie, Thomsen, Magda Teresa, Murray, Daniel, Ullum, Henrik, Neogi, Ujjwal, Nielsen, Susanne Dam
Publicado 2022

Epigenetic alterations in skin homing CD4(+)CLA(+) T cells of atopic dermatitis patients

por Acevedo, Nathalie, Benfeitas, Rui, Katayama, Shintaro, Bruhn, Sören, Andersson, Anna, Wikberg, Gustav, Lundeberg, Lena, Lindvall, Jessica M., Greco, Dario, Kere, Juha, Söderhäll, Cilla, Scheynius, Annika
Publicado 2020

Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis

por Benfeitas, Rui, Bidkhori, Gholamreza, Mukhopadhyay, Bani, Klevstig, Martina, Arif, Muhammad, Zhang, Cheng, Lee, Sunjae, Cinar, Resat, Nielsen, Jens, Uhlen, Mathias, Boren, Jan, Kunos, George, Mardinoglu, Adil
Publicado 2018

Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction

por Arif, Muhammad, Klevstig, Martina, Benfeitas, Rui, Doran, Stephen, Turkez, Hasan, Uhlén, Mathias, Clausen, Maryam, Wikström, Johannes, Etal, Damla, Zhang, Cheng, Levin, Malin, Mardinoglu, Adil, Boren, Jan
Publicado 2021

The central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome

por Gelpi, Marco, Mikaeloff, Flora, Knudsen, Andreas D., Benfeitas, Rui, Krishnan, Shuba, Svenssson Akusjärvi, Sara, Høgh, Julie, Murray, Daniel D., Ullum, Henrik, Neogi, Ujjwal, Nielsen, Susanne D.
Publicado 2021

TCSBN: a database of tissue and cancer specific biological networks

por Lee, Sunjae, Zhang, Cheng, Arif, Muhammad, Liu, Zhengtao, Benfeitas, Rui, Bidkhori, Gholamreza, Deshmukh, Sumit, Al Shobky, Mohamed, Lovric, Alen, Boren, Jan, Nielsen, Jens, Uhlen, Mathias, Mardinoglu, Adil
Publicado 2018

Network-based multi-omics integration reveals metabolic at-risk profile within treated HIV-infection

por Mikaeloff, Flora, Gelpi, Marco, Benfeitas, Rui, Knudsen, Andreas D, Vestad, Beate, Høgh, Julie, Hov, Johannes R, Benfield, Thomas, Murray, Daniel, Giske, Christian G, Mardinoglu, Adil, Trøseid, Marius, Nielsen, Susanne D, Neogi, Ujjwal
Publicado 2023

Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells

por Appelberg, Sofia, Gupta, Soham, Svensson Akusjärvi, Sara, Ambikan, Anoop T., Mikaeloff, Flora, Saccon, Elisa, Végvári, Ákos, Benfeitas, Rui, Sperk, Maike, Ståhlberg, Marie, Krishnan, Shuba, Singh, Kamal, Penninger, Josef M., Mirazimi, Ali, Neogi, Ujjwal
Publicado 2020

Systems-level temporal immune-metabolic profile in Crimean-Congo hemorrhagic fever virus infection

por Ambikan, Anoop T., Elaldi, Nazif, Svensson-Akusjärvi, Sara, Bagci, Binnur, Pektas, Ayse Nur, Hewson, Roger, Bagci, Gokhan, Arasli, Mehmet, Appelberg, Sofia, Mardinoglu, Adil, Sood, Vikas, Végvári, Ákos, Benfeitas, Rui, Gupta, Soham, Cetin, Ilhan, Mirazimi, Ali, Neogi, Ujjwal
Publicado 2023

Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome

por Lovric, Alen, Granér, Marit, Bjornson, Elias, Arif, Muhammad, Benfeitas, Rui, Nyman, Kristofer, Ståhlman, Marcus, Pentikäinen, Markku O., Lundbom, Jesper, Hakkarainen, Antti, Sirén, Reijo, Nieminen, Markku S., Lundbom, Nina, Lauerma, Kirsi, Taskinen, Marja-Riitta, Mardinoglu, Adil, Boren, Jan
Publicado 2018