Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins

por Ak, Prashanth, Benham, Craig J
Publicado 2005

Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress

por Wang, Huiquan, Benham, Craig J
Publicado 2006

Superhelical Destabilization in Regulatory Regions of Stress Response Genes

por Wang, Huiquan, Benham, Craig J
Publicado 2008

Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA

por Zhabinskaya, Dina, Benham, Craig J.
Publicado 2011

Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA

por Zhabinskaya, Dina, Benham, Craig J.
Publicado 2012

Competitive superhelical transitions involving cruciform extrusion

por Zhabinskaya, Dina, Benham, Craig J.
Publicado 2013

SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes

por Wang, Huiquan, Kaloper, Miroslava, Benham, Craig J.
Publicado 2006

The distribution of inverted repeat sequences in the Saccharomyces cerevisiae genome

por Strawbridge, Eva M., Benson, Gary, Gelfand, Yevgeniy, Benham, Craig J.
Publicado 2010

Superhelical Duplex Destabilization and the Recombination Position Effect

por Sershen, Cheryl L., Mell, Joshua C., Madden, Sally M., Benham, Craig J.
Publicado 2011

OriDB: a DNA replication origin database

por Nieduszynski, Conrad A., Hiraga, Shin-ichiro, Ak, Prashanth, Benham, Craig J., Donaldson, Anne D.
Publicado 2007

Interplay between DNA sequence and negative superhelicity drives R-loop structures

por Stolz, Robert, Sulthana, Shaheen, Hartono, Stella R., Malig, Maika, Benham, Craig J., Chedin, Frederic
Publicado 2019

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli

por Du, Xiangjun, Wojtowicz, Damian, Bowers, Albert A., Levens, David, Benham, Craig J., Przytycka, Teresa M.
Publicado 2013

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes

por Hallin, Peter F., Stærfeldt, Hans-Henrik, Rotenberg, Eva, Binnewies, Tim T., Benham, Craig J., Ussery, David W.
Publicado 2009

Single-molecule visualization of the effects of ionic strength and crowding on structure-mediated interactions in supercoiled DNA molecules

por Scott, Shane, Shaheen, Cynthia, McGuinness, Brendon, Metera, Kimberly, Kouzine, Fedor, Levens, David, Benham, Craig J, Leslie, Sabrina
Publicado 2019

Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation

por Du, Xiangjun, Gertz, E. Michael, Wojtowicz, Damian, Zhabinskaya, Dina, Levens, David, Benham, Craig J., Schäffer, Alejandro A., Przytycka, Teresa M.
Publicado 2014

Visualizing structure-mediated interactions in supercoiled DNA molecules

por Scott, Shane, Xu, Zhi Ming, Kouzine, Fedor, Berard, Daniel J, Shaheen, Cynthia, Gravel, Barbara, Saunders, Laura, Hofkirchner, Alexander, Leroux, Catherine, Laurin, Jill, Levens, David, Benham, Craig J, Leslie, Sabrina R
Publicado 2018