goSTAG: gene ontology subtrees to tag and annotate genes within a set

por Bennett, Brian D., Bushel, Pierre R.
Publicado 2017

A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

por Bennett, Brian D., Xiong, Qing, Mukherjee, Sayan, Furey, Terrence S.
Publicado 2012

Correction: A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

por Bennett, Brian D., Xiong, Qing, Mukherjee, Sayan, Furey, Terrence S.
Publicado 2013

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data

por Lavender, Christopher A., Shapiro, Andrew J., Burkholder, Adam B., Bennett, Brian D., Adelman, Karen, Fargo, David C.
Publicado 2017

Rif1 promotes a repressive chromatin state to safeguard against endogenous retrovirus activation

por Li, Pishun, Wang, Li, Bennett, Brian D., Wang, Jiajia, Li, Jialun, Qin, Yufeng, Takaku, Motoki, Wade, Paul A., Wong, Jiemin, Hu, Guang
Publicado 2017

Single-Cell Analyses Identify Dysfunctional CD16(+) CD8 T Cells in Smokers

por Martos, Suzanne N., Campbell, Michelle R., Lozoya, Oswaldo A., Wang, Xuting, Bennett, Brian D., Thompson, Isabel J.B., Wan, Ma, Pittman, Gary S., Bell, Douglas A.
Publicado 2020

GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network

por Takaku, Motoki, Grimm, Sara A., Roberts, John D., Chrysovergis, Kaliopi, Bennett, Brian D., Myers, Page, Perera, Lalith, Tucker, Charles J., Perou, Charles M., Wade, Paul A.
Publicado 2018

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver

por Duncan, Christopher G., Grimm, Sara A., Morgan, Daniel L., Bushel, Pierre R., Bennett, Brian D., Roberts, John D., Tyson, Frederick L., Merrick, B. Alex, Wade, Paul A.
Publicado 2018

Prospective epigenome and transcriptome analyses of cord and peripheral blood from preterm infants at risk of bronchopulmonary dysplasia

por Cho, Hye-Youn, Wang, Xuting, Campbell, Michelle R., Panduri, Vijayalakshmi, Coviello, Silvina, Caballero, Mauricio T., Bennett, Brian D., Kleeberger, Steven R., Polack, Fernando P., Ofman, Gaston, Bell, Douglas A.
Publicado 2023

INO80 governs superenhancer-mediated oncogenic transcription and tumor growth in melanoma

por Zhou, Bingying, Wang, Li, Zhang, Shu, Bennett, Brian D., He, Fan, Zhang, Yan, Xiong, Chengliang, Han, Leng, Diao, Lixia, Li, Pishun, Fargo, David C., Cox, Adrienne D., Hu, Guang
Publicado 2016

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters

por Lavender, Christopher A., Cannady, Kimberly R., Hoffman, Jackson A., Trotter, Kevin W., Gilchrist, Daniel A., Bennett, Brian D., Burkholder, Adam B., Burd, Craig J., Fargo, David C., Archer, Trevor K.
Publicado 2016

NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region

por Oldfield, Andrew J., Henriques, Telmo, Kumar, Dhirendra, Burkholder, Adam B., Cinghu, Senthilkumar, Paulet, Damien, Bennett, Brian D., Yang, Pengyi, Scruggs, Benjamin S., Lavender, Christopher A., Rivals, Eric, Adelman, Karen, Jothi, Raja
Publicado 2019

A Serial shRNA Screen for Roadblocks to Reprogramming Identifies the Protein Modifier SUMO2

por Borkent, Marti, Bennett, Brian D., Lackford, Brad, Bar-Nur, Ori, Brumbaugh, Justin, Wang, Li, Du, Ying, Fargo, David C., Apostolou, Effie, Cheloufi, Sihem, Maherali, Nimet, Elledge, Stephen J., Hu, Guang, Hochedlinger, Konrad
Publicado 2016

CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State

por Zheng, Xiaofeng, Yang, Pengyi, Lackford, Brad, Bennett, Brian D., Wang, Li, Li, Hui, Wang, Yu, Miao, Yiliang, Foley, Julie F., Fargo, David C., Jin, Ying, Williams, Carmen J., Jothi, Raja, Hu, Guang
Publicado 2016

Identification of Smoking-Associated Differentially Methylated Regions Using Reduced Representation Bisulfite Sequencing and Cell type–Specific Enhancer Activation and Gene Express...

por Wan, Ma, Bennett, Brian D., Pittman, Gary S., Campbell, Michelle R., Reynolds, Lindsay M., Porter, Devin K., Crowl, Christopher L., Wang, Xuting, Su, Dan, Englert, Neal A., Thompson, Isabel J., Liu, Yongmei, Bell, Douglas A.
Publicado 2018

Revealing a human p53 universe

por Nguyen, Thuy-Ai T, Grimm, Sara A, Bushel, Pierre R, Li, Jianying, Li, Yuanyuan, Bennett, Brian D, Lavender, Christopher A, Ward, James M, Fargo, David C, Anderson, Carl W, Li, Leping, Resnick, Michael A, Menendez, Daniel
Publicado 2018

Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes

por Su, Dan, Wang, Xuting, Campbell, Michelle R., Porter, Devin K., Pittman, Gary S., Bennett, Brian D., Wan, Ma, Englert, Neal A., Crowl, Christopher L., Gimple, Ryan N., Adamski, Kelly N., Huang, Zhiqing, Murphy, Susan K., Bell, Douglas A.
Publicado 2016

Correction: Distinct Epigenetic Effects of Tobacco Smoking in Whole Blood and among Leukocyte Subtypes

por Su, Dan, Wang, Xuting, Campbell, Michelle R., Porter, Devin K., Pittman, Gary S., Bennett, Brian D., Wan, Ma, Englert, Neal A., Crowl, Christopher L., Gimple, Ryan C., Adamski, Kelly N., Huang, Zhiqing, Murphy, Susan K., Bell, Douglas A.
Publicado 2017

Ancestry-dependent gene expression correlates with reprogramming to pluripotency and multiple dynamic biological processes

por Bisogno, Laura S., Yang, Jun, Bennett, Brian D., Ward, James M., Mackey, Lantz C., Annab, Lois A., Bushel, Pierre R., Singhal, Sandeep, Schurman, Shepherd H., Byun, Jung S., Nápoles, Anna María, Pérez-Stable, Eliseo J., Fargo, David C., Gardner, Kevin, Archer, Trevor K.
Publicado 2020

DNA methylation in mice is influenced by genetics as well as sex and life experience

por Grimm, Sara A., Shimbo, Takashi, Takaku, Motoki, Thomas, James W., Auerbach, Scott, Bennett, Brian D., Bucher, John R., Burkholder, Adam B., Day, Frank, Du, Ying, Duncan, Christopher G., French, John E., Foley, Julie F., Li, Jianying, Merrick, B. Alex, Tice, Raymond R., Wang, Tianyuan, Xu, Xiaojiang, Bushel, Pierre R., Fargo, David C., Mullikin, James C., Wade, Paul A.
Publicado 2019