Chromosome-level genome editing uncovers aneuploidy addiction in cancer

por O’Brien, Siobhan, Berger, Alice H.
Publicado 2023

Oncogenic KRAS alters splicing factor phosphorylation and alternative splicing in lung cancer

por Lo, April, McSharry, Maria, Berger, Alice H.
Publicado 2022

The role of C1q in recognition of apoptotic epithelial cells and inflammatory cytokine production by phagocytes during Helicobacter pylori infection

por Fox, Sarah, Ryan, Kieran A., Berger, Alice H., Petro, Katie, Das, Soumita, Crowe, Sheila E., Ernst, Peter B.
Publicado 2015

Feline calicivirus and other respiratory pathogens in cats with Feline calicivirus-related symptoms and in clinically healthy cats in Switzerland

por Berger, Alice, Willi, Barbara, Meli, Marina L., Boretti, Felicitas S., Hartnack, Sonja, Dreyfus, Anou, Lutz, Hans, Hofmann-Lehmann, Regina
Publicado 2015

Discovery of synthetic lethal and tumor suppressor paralog pairs in the human genome

por Parrish, Phoebe C.R., Thomas, James D., Gabel, Austin M., Kamlapurkar, Shriya, Bradley, Robert K., Berger, Alice H.
Publicado 2021

eVIP2: Expression-based variant impact phenotyping to predict the function of gene variants

por Thornton, Alexis M., Fang, Lishan, Lo, April, McSharry, Maria, Haan, David, O’Brien, Casey, Berger, Alice H., Giannakis, Marios, Brooks, Angela N.
Publicado 2021

Cell Painting predicts impact of lung cancer variants

por Caicedo, Juan C., Arevalo, John, Piccioni, Federica, Bray, Mark-Anthony, Hartland, Cathy L., Wu, Xiaoyun, Brooks, Angela N., Berger, Alice H., Boehm, Jesse S., Carpenter, Anne E., Singh, Shantanu
Publicado 2022

DOK2 Inhibits EGFR-Mutated Lung Adenocarcinoma

por Berger, Alice H., Chen, Ming, Morotti, Alessandro, Janas, Justyna A., Niki, Masaru, Bronson, Roderick T., Taylor, Barry S., Ladanyi, Marc, Van Aelst, Linda, Politi, Katerina, Varmus, Harold E., Pandolfi, Pier Paolo
Publicado 2013

Recommendations for the collection and use of multiplexed functional data for clinical variant interpretation

por Gelman, Hannah, Dines, Jennifer N., Berg, Jonathan, Berger, Alice H., Brnich, Sarah, Hisama, Fuki M., James, Richard G., Rubin, Alan F., Shendure, Jay, Shirts, Brian, Fowler, Douglas M., Starita, Lea M.
Publicado 2019

A novel intradermal tattoo-based injection device enhances the immunogenicity of plasmid DNA vaccines

por Gomez, Alejandro M., Babuadze, George (Giorgi), Plourde-Campagna, Marc-André, Azizi, Hiva, Berger, Alice, Kozak, Robert, de La Vega, Marc-Antoine, XIII, Ara, Naghibosadat, Maedeh, Nepveu-Traversy, Marie-Edith, Ruel, Jean, Kobinger, Gary P.
Publicado 2022

Optimal Expression, Function, and Immunogenicity of an HIV-1 Vaccine Derived from the Approved Ebola Vaccine, rVSV-ZEBOV

por Azizi, Hiva, Knapp, Jason P., Li, Yue, Berger, Alice, Lafrance, Marc-Alexandre, Pedersen, Jannie, de la Vega, Marc-Antoine, Racine, Trina, Kang, Chil-Yong, Mann, Jamie F. S., Dikeakos, Jimmy D., Kobinger, Gary, Arts, Eric J.
Publicado 2023

RNA isoform screens uncover the essentiality and tumor suppressor activity of ultraconserved poison exons

por Thomas, James D., Polaski, Jacob T., Feng, Qing, De Neef, Emma J., Hoppe, Emma R., McSharry, Maria V., Pangallo, Joseph, Gabel, Austin M., Belleville, Andrea E., Watson, Jacqueline, Nkinsi, Naomi T., Berger, Alice H., Bradley, Robert K.
Publicado 2020

Practical clinical and radiological models to diagnose COVID-19 based on a multicentric teleradiological emergency chest CT cohort

por Schuster, Paul, Crombé, Amandine, Nivet, Hubert, Berger, Alice, Pourriol, Laurent, Favard, Nicolas, Chazot, Alban, Alonzo-Lacroix, Florian, Youssof, Emile, Cheikh, Alexandre Ben, Balique, Julien, Porta, Basile, Petitpierre, François, Bouquet, Grégoire, Mastier, Charles, Bratan, Flavie, Bergerot, Jean-François, Thomson, Vivien, Banaste, Nathan, Gorincour, Guillaume
Publicado 2021

Diagnostic accuracy of Panbio rapid antigen tests on oropharyngeal swabs for detection of SARS-CoV-2

por Ngo Nsoga, Marie Thérèse, Kronig, Ilona, Perez Rodriguez, Francisco Javier, Sattonnet-Roche, Pascale, Da Silva, Diogo, Helbling, Javan, Sacks, Jilian A., de Vos, Margaretha, Boehm, Erik, Gayet- Ageron, Angèle, Berger, Alice, Jacquerioz-Bausch, Frédérique, Chappuis, François, Kaiser, Laurent, Schibler, Manuel, Renzoni, Adriana, Eckerle, Isabella
Publicado 2021

Loss of MGA repression mediated by an atypical polycomb complex promotes tumor progression and invasiveness

por Mathsyaraja, Haritha, Catchpole, Jonathen, Freie, Brian, Eastwood, Emily, Babaeva, Ekaterina, Geuenich, Michael, Cheng, Pei Feng, Ayers, Jessica, Yu, Ming, Wu, Nan, Moorthi, Sitapriya, Poudel, Kumud R, Koehne, Amanda, Grady, William, Houghton, A McGarry, Berger, Alice H, Shiio, Yuzuru, MacPherson, David, Eisenman, Robert N
Publicado 2021

Diagnostic accuracy of two commercial SARS-CoV-2 antigen-detecting rapid tests at the point of care in community-based testing centers

por Berger, Alice, Nsoga, Marie Therese Ngo, Perez-Rodriguez, Francisco Javier, Aad, Yasmine Abi, Sattonnet-Roche, Pascale, Gayet-Ageron, Angèle, Jaksic, Cyril, Torriani, Giulia, Boehm, Erik, Kronig, Ilona, Sacks, Jilian A., de Vos, Margaretha, Bausch, Frédérique Jacquerioz, Chappuis, François, Renzoni, Adriana, Kaiser, Laurent, Schibler, Manuel, Eckerle, Isabella
Publicado 2021

Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer

por Vichas, Athea, Riley, Amanda K., Nkinsi, Naomi T., Kamlapurkar, Shriya, Parrish, Phoebe C. R., Lo, April, Duke, Fujiko, Chen, Jennifer, Fung, Iris, Watson, Jacqueline, Rees, Matthew, Gabel, Austin M., Thomas, James D., Bradley, Robert K., Lee, John K., Hatch, Emily M., Baine, Marina K., Rekhtman, Natasha, Ladanyi, Marc, Piccioni, Federica, Berger, Alice H.
Publicado 2021

Rhesus macaques show increased resistance to repeated SHIV intrarectal exposure following a heterologous regimen of rVSV vector vaccine expressing HIV antigen

por Jelinski, Joseph, Kowatsch, Monika M., Lafrance, Marc-Alexandre, Berger, Alice, Pedersen, Jannie, Azizi, Hiva, Li, Yue, Scholte, Florine, Gomez, Alejandro, Hollett, Natasha, Le, Toby, Wade, Matthew, Fausther-Bovendo, Hugues, de La Vega, Marc-Antoine, Babuadze, George, XIII, Ara, Lamarre, Claude, Racine, Trina, Kang, Chil-Yong, Yao, Xiao-Jian, Alter, Galit, Arts, Eric, Fowke, Keith R., Kobinger, Gary P.
Publicado 2023

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

por Campbell, Joshua D., Alexandrov, Anton, Kim, Jaegil, Wala, Jeremiah, Berger, Alice H., Pedamallu, Chandra Sekhar, Shukla, Sachet A., Guo, Guangwu, Brooks, Angela N., Murray, Bradley A., Imielinski, Marcin, Hu, Xin, Ling, Shiyun, Akbani, Rehan, Rosenberg, Mara, Cibulskis, Carrie, Ramachandran, Aruna, Collisson, Eric A., Kwiatkowski, David J., Lawrence, Michael S., Weinstein, John N., Verhaak, Roel G. W., Wu, Catherine J., Hammerman, Peter S., Cherniack, Andrew D., Getz, Gad, Artyomov, Maxim N., Schreiber, Robert, Govindan, Ramaswamy, Meyerson, Matthew
Publicado 2016

Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway

por Carrot-Zhang, Jian, Yao, Xiaotong, Devarakonda, Siddhartha, Deshpande, Aditya, Damrauer, Jeffrey S., Silva, Tiago Chedraoui, Wong, Christopher K., Choi, Hyo Young, Felau, Ina, Robertson, A. Gordon, Castro, Mauro A.A., Bao, Lisui, Rheinbay, Esther, Liu, Eric Minwei, Trieu, Tuan, Haan, David, Yau, Christina, Hinoue, Toshinori, Liu, Yuexin, Shapira, Ofer, Kumar, Kiran, Mungall, Karen L., Zhang, Hailei, Lee, Jake June-Koo, Berger, Ashton, Gao, Galen F., Zhitomirsky, Binyamin, Liang, Wen-Wei, Zhou, Meng, Moorthi, Sitapriya, Berger, Alice H., Collisson, Eric A., Zody, Michael C., Ding, Li, Cherniack, Andrew D., Getz, Gad, Elemento, Olivier, Benz, Christopher C., Stuart, Josh, Zenklusen, J.C., Beroukhim, Rameen, Chang, Jason C., Campbell, Joshua D., Hayes, D. Neil, Yang, Lixing, Laird, Peter W., Weinstein, John N., Kwiatkowski, David J., Tsao, Ming S., Travis, William D., Khurana, Ekta, Berman, Benjamin P., Hoadley, Katherine A., Robine, Nicolas, Meyerson, Matthew, Govindan, Ramaswamy, Imielinski, Marcin
Publicado 2021