Interactive metagenomic visualization in a Web browser

por Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Publicado 2011

Comparative Transcriptional Profiling of Bacillus cereus Sensu Lato Strains during Growth in CO(2)-Bicarbonate and Aerobic Atmospheres

por Passalacqua, Karla D., Varadarajan, Anjana, Byrd, Benjamin, Bergman, Nicholas H.
Publicado 2009

Genomic fluidity: an integrative view of gene diversity within microbial populations

por Kislyuk, Andrey O, Haegeman, Bart, Bergman, Nicholas H, Weitz, Joshua S
Publicado 2011

The National Bioforensic Analysis Center

por Burans, James, Goodrich, Jennifer S., Bull, Robert L., Bergman, Nicholas H.
Publicado 2020

Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

por Ondov, Brian D., Varadarajan, Anjana, Passalacqua, Karla D., Bergman, Nicholas H.
Publicado 2008

Bacillus anthracis genome organization in light of whole transcriptome sequencing

por Martin, Jeffrey, Zhu, Wenhan, Passalacqua, Karla D, Bergman, Nicholas, Borodovsky, Mark
Publicado 2010

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

por Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Publicado 2016

An alignment algorithm for bisulfite sequencing using the Applied Biosystems SOLiD System

por Ondov, Brian D., Cochran, Charles, Landers, Mark, Meredith, Gavin D., Dudas, Miroslav, Bergman, Nicholas H.
Publicado 2010

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

por Koren, Sergey, Walenz, Brian P., Berlin, Konstantin, Miller, Jason R., Bergman, Nicholas H., Phillippy, Adam M.
Publicado 2017

Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis

por Passalacqua, Karla D., Varadarajan, Anjana, Weist, Charlotte, Ondov, Brian D., Byrd, Benjamin, Read, Timothy D., Bergman, Nicholas H.
Publicado 2012

Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution

por Fang, Gang, Passalacqua, Karla D, Hocking, Jason, Llopis, Paula Montero, Gerstein, Mark, Bergman, Nicholas H, Jacobs-Wagner, Christine
Publicado 2013

Mash: fast genome and metagenome distance estimation using MinHash

por Ondov, Brian D., Treangen, Todd J., Melsted, Páll, Mallonee, Adam B., Bergman, Nicholas H., Koren, Sergey, Phillippy, Adam M.
Publicado 2016

Reducing assembly complexity of microbial genomes with single-molecule sequencing

por Koren, Sergey, Harhay, Gregory P, Smith, Timothy PL, Bono, James L, Harhay, Dayna M, Mcvey, Scott D, Radune, Diana, Bergman, Nicholas H, Phillippy, Adam M
Publicado 2013

Complete Genome Sequence of the Quality Control Strain Staphylococcus aureus subsp. aureus ATCC 25923

por Treangen, Todd J., Maybank, Rosslyn A., Enke, Sana, Friss, Mary Beth, Diviak, Lynn F., Karaolis, David K. R., Koren, Sergey, Ondov, Brian, Phillippy, Adam M., Bergman, Nicholas H., Rosovitz, M. J.
Publicado 2014

Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens

por Loreille, Odile, Ratnayake, Shashikala, Bazinet, Adam L., Stockwell, Timothy B., Sommer, Daniel D., Rohland, Nadin, Mallick, Swapan, Johnson, Philip L.F., Skoglund, Pontus, Onorato, Anthony J., Bergman, Nicholas H., Reich, David, Irwin, Jodi A.
Publicado 2018

Non-Toxin-Producing Bacillus cereus Strains Belonging to the B. anthracis Clade Isolated from the International Space Station

por Venkateswaran, Kasthuri, Singh, Nitin K., Checinska Sielaff, Aleksandra, Pope, Robert K., Bergman, Nicholas H., van Tongeren, Sandra P., Patel, Nisha B., Lawson, Paul A., Satomi, Masataka, Williamson, Charles H. D., Sahl, Jason W., Keim, Paul, Pierson, Duane, Perry, Jay
Publicado 2017

Genome Sequence of the Attenuated Carbosap Vaccine Strain of Bacillus anthracis

por Harrington, Robin, Ondov, Brian D., Radune, Diana, Friss, Mary Beth, Klubnik, Joy, Diviak, Lynn, Hnath, Jonathan, Cendrowski, Stephen R., Blank, Thomas E., Karaolis, David, Friedlander, Arthur M., Burans, James P., Rosovitz, M. J., Treangen, Todd, Phillippy, Adam M., Bergman, Nicholas H.
Publicado 2013

Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station

por Venkateswaran, Kasthuri, Checinska Sielaff, Aleksandra, Ratnayake, Shashikala, Pope, Robert K., Blank, Thomas E., Stepanov, Victor G., Fox, George E., van Tongeren, Sandra P., Torres, Clinton, Allen, Jonathan, Jaing, Crystal, Pierson, Duane, Perry, Jay, Koren, Sergey, Phillippy, Adam, Klubnik, Joy, Treangen, Todd J., Rosovitz, M. J., Bergman, Nicholas H.
Publicado 2017

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation

por Miller, Jason R, Koren, Sergey, Dilley, Kari A, Puri, Vinita, Brown, David M, Harkins, Derek M, Thibaud-Nissen, Françoise, Rosen, Benjamin, Chen, Xiao-Guang, Tu, Zhijian, Sharakhov, Igor V, Sharakhova, Maria V, Sebra, Robert, Stockwell, Timothy B, Bergman, Nicholas H, Sutton, Granger G, Phillippy, Adam M, Piermarini, Peter M, Shabman, Reed S
Publicado 2018

Draft Genome Sequences of Five Historical Bacillus anthracis Strains

por Sommer, Daniel D., Ratnayake, Shashikala, Radune, Diana, Parker, Kisha, Enke, Sana, Ferguson, Tracy M., Lovett, Marie, Mallonee, Adam, Rae, Zach, Rosovitz, M. J., Diviak, Lynn F., Friss, Mary Beth, Klubnik, Joy P., Fronda, Kathy H., Horn, Gregory P., Blank, Thomas E., Pope, Robert K., Hanna, Philip C., Bergman, Nicholas H., Bazinet, Adam L.
Publicado 2020