Mg(2+) Binding Promotes SLV as a Scaffold in Varkud Satellite Ribozyme SLI-SLV Kissing Loop Junction

por Bergonzo, Christina, Cheatham, Thomas E.
Publicado 2017

Using All-Atom Potentials to Refine RNA Structure Predictions of SARS-CoV-2 Stem Loops

por Bergonzo, Christina, Szakal, Andrea L.
Publicado 2020

Atomic Model Structure of the NIST Monoclonal Antibody (NISTmAb) Reference Material

por Bergonzo, Christina, Gallagher, D. Travis
Publicado 2021

Conformational heterogeneity of UCAAUC RNA oligonucleotide from molecular dynamics simulations, SAXS, and NMR experiments

por Bergonzo, Christina, Grishaev, Alexander, Bottaro, Sandro
Publicado 2022

Evaluation of Enhanced Sampling Provided by Accelerated Molecular Dynamics with Hamiltonian Replica Exchange Methods

por Roe, Daniel R., Bergonzo, Christina, Cheatham, Thomas E.
Publicado 2014

Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg(2+) Bound Structure in the Presence of Monovalent Ions

por Bergonzo, Christina, Hall, Kathleen B., Cheatham, Thomas E.
Publicado 2015

Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics

por Bergonzo, Christina, Hall, Kathleen B., Cheatham, Thomas E.
Publicado 2016

Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields

por Bergonzo, Christina, Henriksen, Niel M., Roe, Daniel R., Cheatham, Thomas E.
Publicado 2015

Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide

por Bergonzo, Christina, Henriksen, Niel M., Roe, Daniel R., Swails, Jason M., Roitberg, Adrian E., Cheatham, Thomas E.
Publicado 2013

A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine–DNA glycosylase

por Li, Haoquan, Endutkin, Anton V., Bergonzo, Christina, Campbell, Arthur J., de los Santos, Carlos, Grollman, Arthur, Zharkov, Dmitry O., Simmerling, Carlos
Publicado 2016

Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition

por Kuznetsov, Nikita A., Bergonzo, Christina, Campbell, Arthur J., Li, Haoquan, Mechetin, Grigory V., de los Santos, Carlos, Grollman, Arthur P., Fedorova, Olga S., Zharkov, Dmitry O., Simmerling, Carlos
Publicado 2015