Molecular dynamics study of enhanced Man5B enzymatic activity

por Bernardi, Rafael C, Cann, Isaac, Schulten, Klaus
Publicado 2014

Protein structure prediction in the era of AI: Challenges and limitations when applying to in silico force spectroscopy

por Gomes, Priscila S. F. C., Gomes, Diego E. B., Bernardi, Rafael C.
Publicado 2022

Streptavidin/biotin: Tethering geometry defines unbinding mechanics

por Sedlak, Steffen M., Schendel, Leonard C., Gaub, Hermann E., Bernardi, Rafael C.
Publicado 2020

High force catch bond mechanism of bacterial adhesion in the human gut

por Liu, Zhaowei, Liu, Haipei, Vera, Andrés M., Bernardi, Rafael C., Tinnefeld, Philip, Nash, Michael A.
Publicado 2020

May the force be with you: The role of hyper-mechanostability of the bone sialoprotein binding protein during early stages of Staphylococci infections

por Gomes, Priscila S. F. C., Forrester, Meredith, Pace, Margaret, Gomes, Diego E. B., Bernardi, Rafael C.
Publicado 2023

QwikMD — Integrative Molecular Dynamics Toolkit for Novices and Experts

por Ribeiro, João V., Bernardi, Rafael C., Rudack, Till, Stone, John E., Phillips, James C., Freddolino, Peter L., Schulten, Klaus
Publicado 2016

Skeletal Dysplasia Mutations Effect on Human Filamins’ Structure and Mechanosensing

por Seppälä, Jonne, Bernardi, Rafael C., Haataja, Tatu J. K., Hellman, Maarit, Pentikäinen, Olli T., Schulten, Klaus, Permi, Perttu, Ylänne, Jari, Pentikäinen, Ulla
Publicado 2017

Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy

por Bernardi, Rafael C., Durner, Ellis, Schoeler, Constantin, Malinowska, Klara H., Carvalho, Bruna G., Bayer, Edward A., Luthey-Schulten, Zaida, Gaub, Hermann E., Nash, Michael A.
Publicado 2019

A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions

por Bauer, Magnus S., Gruber, Sophia, Hausch, Adina, Milles, Lukas F., Nicolaus, Thomas, Schendel, Leonard C., López Navajas, Pilar, Procko, Erik, Lietha, Daniel, Bernardi, Rafael C., Lipfert, Jan, Gaub, Hermann E.
Publicado 2022

The Structural Dynamics of the Flavivirus Fusion Peptide–Membrane Interaction

por Mendes, Ygara S., Alves, Nathalia S., Souza, Theo L. F., Sousa, Ivanildo P., Bianconi, M. Lucia, Bernardi, Rafael C., Pascutti, Pedro G., Silva, Jerson L., Gomes, Andre M. O., Oliveira, Andréa C.
Publicado 2012

Ultrastable cellulosome-adhesion complex tightens under load

por Schoeler, Constantin, Malinowska, Klara H., Bernardi, Rafael C., Milles, Lukas F., Jobst, Markus A., Durner, Ellis, Ott, Wolfgang, Fried, Daniel B., Bayer, Edward A., Schulten, Klaus, Gaub, Hermann E., Nash, Michael A.
Publicado 2014

NAMD goes quantum: An integrative suite for QM/MM simulations

por Melo, Marcelo C. R., Bernardi, Rafael C., Rudack, Till, Scheurer, Maximilian, Riplinger, Christoph, Phillips, James C., Maia, Julio D. C., Rocha, Gerd B., Ribeiro, João V., Stone, John E., Neese, Frank, Schulten, Klaus, Luthey-Schulten, Zaida
Publicado 2018

Deciphering molecular mechanisms stabilizing the reovirus-binding complex

por dos Santos Natividade, Rita, Koehler, Melanie, Gomes, Priscila S. F. C., Simpson, Joshua D., Smith, Sydni Caet, Gomes, Diego E. B., de Lhoneux, Juliette, Yang, Jinsung, Ray, Ankita, Dermody, Terence S., Bernardi, Rafael C., Ogden, Kristen M., Alsteens, David
Publicado 2023

A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions

por Bauer, Magnus S., Gruber, Sophia, Hausch, Adina, Gomes, Priscila S. F. C., Milles, Lukas F., Nicolaus, Thomas, Schendel, Leonard C., Navajas, Pilar López, Procko, Erik, Lietha, Daniel, Melo, Marcelo C. R., Bernardi, Rafael C., Gaub, Hermann E., Lipfert, Jan
Publicado 2022