RNA Accessibility in cubic time

por Bernhart, Stephan H, Mückstein, Ullrike, Hofacker, Ivo L
Publicado 2011

DIEGO: detection of differential alternative splicing using Aitchison’s geometry

por Doose, Gero, Bernhart, Stephan H, Wagener, Rabea, Hoffmann, Steve
Publicado 2018

Strategies for measuring evolutionary conservation of RNA secondary structures

por Gruber, Andreas R, Bernhart, Stephan H, Hofacker, Ivo L, Washietl, Stefan
Publicado 2008

The DREAM complex through its subunit Lin37 cooperates with Rb to initiate quiescence

por Mages, Christina FS, Wintsche, Axel, Bernhart, Stephan H, Müller, Gerd A
Publicado 2017

The Vienna RNA Websuite

por Gruber, Andreas R., Lorenz, Ronny, Bernhart, Stephan H., Neuböck, Richard, Hofacker, Ivo L.
Publicado 2008

RNAalifold: improved consensus structure prediction for RNA alignments

por Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F
Publicado 2008

A folding algorithm for extended RNA secondary structures

por zu Siederdissen, Christian Höner, Bernhart, Stephan H., Stadler, Peter F., Hofacker, Ivo L.
Publicado 2011

A (GCC) repeat in SBF1 reveals a novel biological phenomenon in human and links to late onset neurocognitive disorder

por Khamse, Safoura, Alizadeh, Samira, Bernhart, Stephan H., Afshar, Hossein, Delbari, Ahmad, Ohadi, Mina
Publicado 2022

metilene: fast and sensitive calling of differentially methylated regions from bisulfite sequencing data

por Jühling, Frank, Kretzmer, Helene, Bernhart, Stephan H., Otto, Christian, Stadler, Peter F., Hoffmann, Steve
Publicado 2016

Partition function and base pairing probabilities of RNA heterodimers

por Bernhart, Stephan H, Tafer, Hakim, Mückstein, Ulrike, Flamm, Christoph, Stadler, Peter F, Hofacker, Ivo L
Publicado 2006

Deletion analysis of the 3′ long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer

por Tramontano, Andrea, Donath, Alexander, Bernhart, Stephan H., Reiche, Kristin, Böhmdorfer, Gudrun, Stadler, Peter F., Bachmair, Andreas
Publicado 2011

Noncoding RNA Transcripts during Differentiation of Induced Pluripotent Stem Cells into Hepatocytes

por Skrzypczyk, Aniela, Kehr, Stephanie, Krystel, Ilona, Bernhart, Stephan H., Giri, Shibashish, Bader, Augustinus, Stadler, Peter F.
Publicado 2018

The Evolving Faces of the SARS-CoV-2 Genome

por Schmidt, Maria, Arshad, Mamoona, Bernhart, Stephan H., Hakobyan, Siras, Arakelyan, Arsen, Loeffler-Wirth, Henry, Binder, Hans
Publicado 2021

RNPomics: Defining the ncRNA transcriptome by cDNA library generation from ribonucleo-protein particles

por Rederstorff, Mathieu, Bernhart, Stephan H., Tanzer, Andrea, Zywicki, Marek, Perfler, Katrin, Lukasser, Melanie, Hofacker, Ivo L., Hüttenhofer, Alexander
Publicado 2010

Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea

por Schwarz, Thandi S., Berkemer, Sarah J., Bernhart, Stephan H., Weiß, Matthias, Ferreira-Cerca, Sébastien, Stadler, Peter F., Marchfelder, Anita
Publicado 2020

ViennaRNA Package 2.0

por Lorenz, Ronny, Bernhart, Stephan H, Höner zu Siederdissen, Christian, Tafer, Hakim, Flamm, Christoph, Stadler, Peter F, Hofacker, Ivo L
Publicado 2011

Improved annotation of protein-coding genes boundaries in metazoan mitochondrial genomes

por Donath, Alexander, Jühling, Frank, Al-Arab, Marwa, Bernhart, Stephan H, Reinhardt, Franziska, Stadler, Peter F, Middendorf, Martin, Bernt, Matthias
Publicado 2019

Transcription factor RFX7 governs a tumor suppressor network in response to p53 and stress

por Coronel, Luis, Riege, Konstantin, Schwab, Katjana, Förste, Silke, Häckes, David, Semerau, Lena, Bernhart, Stephan H, Siebert, Reiner, Hoffmann, Steve, Fischer, Martin
Publicado 2021

DREAM and RB cooperate to induce gene repression and cell-cycle arrest in response to p53 activation

por Uxa, Sigrid, Bernhart, Stephan H, Mages, Christina F S, Fischer, Martin, Kohler, Robin, Hoffmann, Steve, Stadler, Peter F, Engeland, Kurt, Müller, Gerd A
Publicado 2019

Identification of RNA 3´ ends and termination sites in Haloferax volcanii

por Berkemer, Sarah J., Maier, Lisa-Katharina, Amman, Fabian, Bernhart, Stephan H., Wörtz, Julia, Märkle, Pascal, Pfeiffer, Friedhelm, Stadler, Peter F., Marchfelder, Anita
Publicado 2020