Annotating cell types in human single-cell RNA-seq data with CellO

por Bernstein, Matthew N., Dewey, Colin N.
Publicado 2021

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive

por Bernstein, Matthew N, Doan, AnHai, Dewey, Colin N
Publicado 2017

CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

por Bernstein, Matthew N., Ma, Zhongjie, Gleicher, Michael, Dewey, Colin N.
Publicado 2020

The Psychological and Financial Impact of Long-distance Travel for Liver Transplantation

por Peretz, David, Grubert Van Iderstine, Micah, Bernstein, Matthew, Minuk, Gerald Y.
Publicado 2020

Quality of Late-Life Depression Information on the Internet: Website Evaluation Study

por Pryor, Teaghan A M, Reynolds, Kristin A, Kirby, Paige L, Bernstein, Matthew T
Publicado 2022

Gathering Opinions on Depression Information Needs and Preferences: Samples and Opinions in Clinic Versus Web-Based Surveys

por Bernstein, Matthew T, Walker, John R, Sexton, Kathryn A, Katz, Alan, Beatie, Brooke E
Publicado 2017

Gastrointestinal symptoms before and during menses in healthy women

por Bernstein, Matthew T, Graff, Lesley A, Avery, Lisa, Palatnick, Carrie, Parnerowski, Katie, Targownik, Laura E
Publicado 2014

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive

por Bernstein, Matthew N., Gladstein, Ariella, Latt, Khun Zaw, Clough, Emily, Busby, Ben, Dillman, Allissa
Publicado 2020

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets

por Bernstein, Matthew N., Ni, Zijian, Collins, Michael, Burkard, Mark E., Kendziorski, Christina, Stewart, Ron
Publicado 2021

Examining Anxiety Treatment Information Needs: Web-Based Survey Study

por Bernstein, Matthew T, Reynolds, Kristin A, Jakobson, Lorna S, Stoesz, Brenda M, Alcolado, Gillian M, Furer, Patricia
Publicado 2022

Assessing the Relationship between Sources of Stress and Symptom Changes among Persons with IBD over Time: A Prospective Study

por Bernstein, Matthew T., Targownik, Laura E., Sexton, Kathryn A., Graff, Lesley A., Miller, Norine, Walker, John R.
Publicado 2016

Evaluating Information Quality of Revised Patient Education Information on Colonoscopy: It Is New But Is It Improved?

por Bernstein, Matthew Tyler, Kong, James, Sriranjan, Vaelan, Reisdorf, Sofia, Restall, Gayle, Walker, John Roger, Singh, Harminder
Publicado 2019

New Patient Education Video on Colonoscopy Preparation: Development and Evaluation Study

por Bernstein, Matthew T, Garber, Jesse, Faucher, Patrick, Reynolds, Kristin A, Restall, Gayle, Walker, John R, Singh, Harminder
Publicado 2020

SpatialCorr identifies gene sets with spatially varying correlation structure

por Bernstein, Matthew N., Ni, Zijian, Prasad, Aman, Brown, Jared, Mohanty, Chitrasen, Stewart, Ron, Newton, Michael A., Kendziorski, Christina
Publicado 2022

An evaluation of the quality of online perinatal depression information

por Hardman, Madison P., Reynolds, Kristin A., Petty, Sarah K., Pryor, Teaghan A. M., Pierce, Shayna K., Bernstein, Matthew T., Furer, Patricia
Publicado 2022

Molecular encoding of stimulus features in a single sensory neuron type enables neuronal and behavioral plasticity

por Harris, Nathan, Bates, Samuel, Zhuang, Zihao, Bernstein, Matthew, Stonemetz, Jamie, Hill, Tyler, Yu, Yanxun V., Calarco, John A., Sengupta, Piali
Publicado 2023

Generation of anti-GD2 CAR macrophages from human pluripotent stem cells for cancer immunotherapies

por Zhang, Jue, Webster, Sarah, Duffin, Bret, Bernstein, Matthew N., Steill, John, Swanson, Scott, Forsberg, Matthew H., Bolin, Jennifer, Brown, Matthew E., Majumder, Aditi, Capitini, Christian M., Stewart, Ron, Thomson, James A., Slukvin, Igor I.
Publicado 2023

Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study

por Clooney, Adam G, Eckenberger, Julia, Laserna-Mendieta, Emilio, Sexton, Kathryn A, Bernstein, Matthew T, Vagianos, Kathy, Sargent, Michael, Ryan, Feargal J, Moran, Carthage, Sheehan, Donal, Sleator, Roy D, Targownik, Laura E, Bernstein, Charles N, Shanahan, Fergus, Claesson, Marcus J
Publicado 2021

Large-scale Multi-omic Analysis of COVID-19 Severity

por Overmyer, Katherine A., Shishkova, Evgenia, Miller, Ian J., Balnis, Joseph, Bernstein, Matthew N., Peters-Clarke, Trenton M., Meyer, Jesse G., Quan, Qiuwen, Muehlbauer, Laura K., Trujillo, Edna A., He, Yuchen, Chopra, Amit, Chieng, Hau C., Tiwari, Anupama, Judson, Marc A., Paulson, Brett, Brademan, Dain R., Zhu, Yunyun, Serrano, Lia R., Linke, Vanessa, Drake, Lisa A., Adam, Alejandro P., Schwartz, Bradford S., Singer, Harold A., Swanson, Scott, Mosher, Deane F., Stewart, Ron, Coon, Joshua J., Jaitovich, Ariel
Publicado 2020

Large-Scale Multi-omic Analysis of COVID-19 Severity

por Overmyer, Katherine A., Shishkova, Evgenia, Miller, Ian J., Balnis, Joseph, Bernstein, Matthew N., Peters-Clarke, Trenton M., Meyer, Jesse G., Quan, Qiuwen, Muehlbauer, Laura K., Trujillo, Edna A., He, Yuchen, Chopra, Amit, Chieng, Hau C., Tiwari, Anupama, Judson, Marc A., Paulson, Brett, Brademan, Dain R., Zhu, Yunyun, Serrano, Lia R., Linke, Vanessa, Drake, Lisa A., Adam, Alejandro P., Schwartz, Bradford S., Singer, Harold A., Swanson, Scott, Mosher, Deane F., Stewart, Ron, Coon, Joshua J., Jaitovich, Ariel
Publicado 2021