Annotating cell types in human single-cell RNA-seq data with CellO

por Bernstein, Matthew N., Dewey, Colin N.
Publicado 2021

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive

por Bernstein, Matthew N, Doan, AnHai, Dewey, Colin N
Publicado 2017

CellO: comprehensive and hierarchical cell type classification of human cells with the Cell Ontology

por Bernstein, Matthew N., Ma, Zhongjie, Gleicher, Michael, Dewey, Colin N.
Publicado 2020

Jupyter notebook-based tools for building structured datasets from the Sequence Read Archive

por Bernstein, Matthew N., Gladstein, Ariella, Latt, Khun Zaw, Clough, Emily, Busby, Ben, Dillman, Allissa
Publicado 2020

CHARTS: a web application for characterizing and comparing tumor subpopulations in publicly available single-cell RNA-seq data sets

por Bernstein, Matthew N., Ni, Zijian, Collins, Michael, Burkard, Mark E., Kendziorski, Christina, Stewart, Ron
Publicado 2021

SpatialCorr identifies gene sets with spatially varying correlation structure

por Bernstein, Matthew N., Ni, Zijian, Prasad, Aman, Brown, Jared, Mohanty, Chitrasen, Stewart, Ron, Newton, Michael A., Kendziorski, Christina
Publicado 2022

Generation of anti-GD2 CAR macrophages from human pluripotent stem cells for cancer immunotherapies

por Zhang, Jue, Webster, Sarah, Duffin, Bret, Bernstein, Matthew N., Steill, John, Swanson, Scott, Forsberg, Matthew H., Bolin, Jennifer, Brown, Matthew E., Majumder, Aditi, Capitini, Christian M., Stewart, Ron, Thomson, James A., Slukvin, Igor I.
Publicado 2023

Large-scale Multi-omic Analysis of COVID-19 Severity

por Overmyer, Katherine A., Shishkova, Evgenia, Miller, Ian J., Balnis, Joseph, Bernstein, Matthew N., Peters-Clarke, Trenton M., Meyer, Jesse G., Quan, Qiuwen, Muehlbauer, Laura K., Trujillo, Edna A., He, Yuchen, Chopra, Amit, Chieng, Hau C., Tiwari, Anupama, Judson, Marc A., Paulson, Brett, Brademan, Dain R., Zhu, Yunyun, Serrano, Lia R., Linke, Vanessa, Drake, Lisa A., Adam, Alejandro P., Schwartz, Bradford S., Singer, Harold A., Swanson, Scott, Mosher, Deane F., Stewart, Ron, Coon, Joshua J., Jaitovich, Ariel
Publicado 2020

Large-Scale Multi-omic Analysis of COVID-19 Severity

por Overmyer, Katherine A., Shishkova, Evgenia, Miller, Ian J., Balnis, Joseph, Bernstein, Matthew N., Peters-Clarke, Trenton M., Meyer, Jesse G., Quan, Qiuwen, Muehlbauer, Laura K., Trujillo, Edna A., He, Yuchen, Chopra, Amit, Chieng, Hau C., Tiwari, Anupama, Judson, Marc A., Paulson, Brett, Brademan, Dain R., Zhu, Yunyun, Serrano, Lia R., Linke, Vanessa, Drake, Lisa A., Adam, Alejandro P., Schwartz, Bradford S., Singer, Harold A., Swanson, Scott, Mosher, Deane F., Stewart, Ron, Coon, Joshua J., Jaitovich, Ariel
Publicado 2021