Evolution of orthologous tandemly arrayed gene clusters

por Tremblay Savard, Olivier, Bertrand, Denis, El-Mabrouk, Nadia
Publicado 2011

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees

por Gao, Song, Bertrand, Denis, Chia, Burton K. H., Nagarajan, Niranjan
Publicado 2016

Genomic patterns of divergence in the early and late steps of speciation of the deep-sea vent thermophilic worms of the genus Alvinella

por Thomas-Bulle, Camille, Bertrand, Denis, Nagarajan, Niranjan, Copley, Richard R., Corre, Erwan, Hourdez, Stéphane, Bonnivard, Éric, Claridge-Chang, Adam, Jollivet, Didier
Publicado 2022

The artiodactyl APOBEC3 innate immune repertoire shows evidence for a multi-functional domain organization that existed in the ancestor of placental mammals

por LaRue, Rebecca S, Jónsson, Stefán R, Silverstein, Kevin AT, Lajoie, Mathieu, Bertrand, Denis, El-Mabrouk, Nadia, Hötzel, Isidro, Andrésdóttir, Valgerdur, Smith, Timothy PL, Harris, Reuben S
Publicado 2008

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

por Commichaux, Seth, Javkar, Kiran, Ramachandran, Padmini, Nagarajan, Niranjan, Bertrand, Denis, Chen, Yi, Reed, Elizabeth, Gonzalez-Escalona, Narjol, Strain, Errol, Rand, Hugh, Pop, Mihai, Ottesen, Andrea
Publicado 2021

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets

por Wilm, Andreas, Aw, Pauline Poh Kim, Bertrand, Denis, Yeo, Grace Hui Ting, Ong, Swee Hoe, Wong, Chang Hua, Khor, Chiea Chuen, Petric, Rosemary, Hibberd, Martin Lloyd, Nagarajan, Niranjan
Publicado 2012

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles

por Bertrand, Denis, Chng, Kern Rei, Sherbaf, Faranak Ghazi, Kiesel, Anja, Chia, Burton K. H., Sia, Yee Yen, Huang, Sharon K., Hoon, Dave S.B., Liu, Edison T., Hillmer, Axel, Nagarajan, Niranjan
Publicado 2015

Long-term ecological and evolutionary dynamics in the gut microbiomes of carbapenemase-producing Enterobacteriaceae colonized subjects

por Kang, Jonathan T. L., Teo, Jonathan J. Y., Bertrand, Denis, Ng, Amanda, Ravikrishnan, Aarthi, Yong, Melvin, Ng, Oon Tek, Marimuthu, Kalisvar, Chen, Swaine L., Chng, Kern Rei, Gan, Yunn-Hwen, Nagarajan, Niranjan
Publicado 2022

Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians

por Gounot, Jean-Sebastien, Chia, Minghao, Bertrand, Denis, Saw, Woei-Yuh, Ravikrishnan, Aarthi, Low, Adrian, Ding, Yichen, Ng, Amanda Hui Qi, Tan, Linda Wei Lin, Teo, Yik-Ying, Seedorf, Henning, Nagarajan, Niranjan
Publicado 2022

Duration of Carbapenemase-Producing Enterobacteriaceae Carriage in Hospital Patients

por Mo, Yin, Hernandez-Koutoucheva, Anastasia, Musicha, Patrick, Bertrand, Denis, Lye, David, Ng, Oon Tek, Fenlon, Shannon N., Chen, Swaine L., Ling, Moi Lin, Tang, Wen Ying, Barkham, Timothy, Nagarajan, Niranjan, Cooper, Ben S., Marimuthu, Kalisvar
Publicado 2020

Mutational spectrum of Barrett's stem cells suggests paths to initiation of a precancerous lesion

por Yamamoto, Yusuke, Wang, Xia, Bertrand, Denis, Kern, Florian, Zhang, Ting, Duleba, Marcin, Srivastava, Supriya, Khor, Chiea Chuen, Hu, Yuanyu, Wilson, Lane H., Blaszyk, Hagen, Rolshud, Daniil, Teh, Ming, Liu, Jianjun, Howitt, Brooke E., Vincent, Matthew, Crum, Christopher P., Nagarajan, Niranjan, Ho, Khek Yu, McKeon, Frank, Xian, Wa
Publicado 2016

Systems consequences of amplicon formation in human breast cancer

por Inaki, Koichiro, Menghi, Francesca, Woo, Xing Yi, Wagner, Joel P., Jacques, Pierre-Étienne, Lee, Yi Fang, Shreckengast, Phung Trang, Soon, Wendy WeiJia, Malhotra, Ankit, Teo, Audrey S.M., Hillmer, Axel M., Khng, Alexis Jiaying, Ruan, Xiaoan, Ong, Swee Hoe, Bertrand, Denis, Nagarajan, Niranjan, Karuturi, R. Krishna Murthy, Hidalgo Miranda, Alfredo, Liu, Edison T.
Publicado 2014

Cloning and Variation of Ground State Intestinal Stem Cells

por Wang, Xia, Yamamoto, Yusuke, Wilson, Lane H., Zhang, Ting, Howitt, Brooke, Farrow, Melissa A., Kern, Florian, Ning, Gang, Hong, Yue, Khor, Chiea Chuen, Chevalier, Benoit, Bertrand, Denis, Wu, Lingyan, Nagarajan, Niranjan, Sylvester, Francisco A., Hyams, Jeffrey S., Devers, Thomas, Bronson, Roderick, Lacy, D. Borden, Ho, Khek Yu, Crum, Christopher P., McKeon, Frank, Xian, Wa
Publicado 2015

The Opisthorchis viverrini genome provides insights into life in the bile duct

por Young, Neil D., Nagarajan, Niranjan, Lin, Suling Joyce, Korhonen, Pasi K., Jex, Aaron R., Hall, Ross S., Safavi-Hemami, Helena, Kaewkong, Worasak, Bertrand, Denis, Gao, Song, Seet, Qihui, Wongkham, Sopit, Teh, Bin Tean, Wongkham, Chaisiri, Intapan, Pewpan Maleewong, Maleewong, Wanchai, Yang, Xinhua, Hu, Min, Wang, Zuo, Hofmann, Andreas, Sternberg, Paul W., Tan, Patrick, Wang, Jun, Gasser, Robin B.
Publicado 2014

Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment

por Chng, Kern Rei, Li, Chenhao, Bertrand, Denis, Ng, Amanda Hui Qi, Kwah, Junmei Samantha, Low, Hwee Meng, Tong, Chengxuan, Natrajan, Maanasa, Zhang, Michael Hongjie, Xu, Licheng, Ko, Karrie Kwan Ki, Ho, Eliza Xin Pei, Av-Shalom, Tamar V., Teo, Jeanette Woon Pei, Khor, Chiea Chuen, Chen, Swaine L., Mason, Christopher E., Ng, Oon Tek, Marimuthu, Kalisvar, Ang, Brenda, Nagarajan, Niranjan
Publicado 2020

Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma

por Chng, Kern Rei, Chan, Sock Hoai, Ng, Amanda Hui Qi, Li, Chenhao, Jusakul, Apinya, Bertrand, Denis, Wilm, Andreas, Choo, Su Pin, Tan, Damien Meng Yew, Lim, Kiat Hon, Soetinko, Roy, Ong, Choon Kiat, Duda, Dan G., Dima, Simona, Popescu, Irinel, Wongkham, Chaisiri, Feng, Zhu, Yeoh, Khay Guan, Teh, Bin Tean, Yongvanit, Puangrat, Wongkham, Sopit, Bhudhisawasdi, Vajaraphongsa, Khuntikeo, Narong, Tan, Patrick, Pairojkul, Chawalit, Ngeow, Joanne, Nagarajan, Niranjan
Publicado 2016

Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time

por Chia, Shumei, Low, Joo-Leng, Zhang, Xiaoqian, Kwang, Xue-Lin, Chong, Fui-Teen, Sharma, Ankur, Bertrand, Denis, Toh, Shen Yon, Leong, Hui-Sun, Thangavelu, Matan T., Hwang, Jacqueline S. G., Lim, Kok-Hing, Skanthakumar, Thakshayeni, Tan, Hiang-Khoon, Su, Yan, Hui Choo, Siang, Hentze, Hannes, Tan, Iain B. H., Lezhava, Alexander, Tan, Patrick, Tan, Daniel S. W., Periyasamy, Giridharan, Koh, Judice L. Y., Gopalakrishna Iyer, N., DasGupta, Ramanuj
Publicado 2017

Immunological corollary of the pulmonary mycobiome in bronchiectasis: the CAMEB study

por Mac Aogáin, Micheál, Chandrasekaran, Ravishankar, Lim, Albert Yick Hou, Low, Teck Boon, Tan, Gan Liang, Hassan, Tidi, Ong, Thun How, Hui Qi Ng, Amanda, Bertrand, Denis, Koh, Jia Yu, Pang, Sze Lei, Lee, Zi Yang, Gwee, Xiao Wei, Martinus, Christopher, Sio, Yang Yie, Matta, Sri Anusha, Chew, Fook Tim, Keir, Holly R., Connolly, John E., Abisheganaden, John Arputhan, Koh, Mariko Siyue, Nagarajan, Niranjan, Chalmers, James D., Chotirmall, Sanjay H.
Publicado 2018

Whole-genome reconstruction and mutational signatures in gastric cancer

por Nagarajan, Niranjan, Bertrand, Denis, Hillmer, Axel M, Zang, Zhi Jiang, Yao, Fei, Jacques, Pierre-Étienne, Teo, Audrey SM, Cutcutache, Ioana, Zhang, Zhenshui, Lee, Wah Heng, Sia, Yee Yen, Gao, Song, Ariyaratne, Pramila N, Ho, Andrea, Woo, Xing Yi, Veeravali, Lavanya, Ong, Choon Kiat, Deng, Niantao, Desai, Kartiki V, Khor, Chiea Chuen, Hibberd, Martin L, Shahab, Atif, Rao, Jaideepraj, Wu, Mengchu, Teh, Ming, Zhu, Feng, Chin, Sze Yung, Pang, Brendan, So, Jimmy BY, Bourque, Guillaume, Soong, Richie, Sung, Wing-Kin, Tean Teh, Bin, Rozen, Steven, Ruan, Xiaoan, Yeoh, Khay Guan, Tan, Patrick BO, Ruan, Yijun
Publicado 2012

Comprehensive Characterization of Cancer Driver Genes and Mutations

por Bailey, Matthew H., Tokheim, Collin, Porta-Pardo, Eduard, Sengupta, Sohini, Bertrand, Denis, Weerasinghe, Amila, Colaprico, Antonio, Wendl, Michael C., Kim, Jaegil, Reardon, Brendan, Ng, Patrick Kwok-Shing, Jeong, Kang Jin, Cao, Song, Wang, Zixing, Gao, Jianjiong, Gao, Qingsong, Wang, Fang, Liu, Eric Minwei, Mularoni, Loris, Rubio-Perez, Carlota, Nagarajan, Niranjan, Cortés-Ciriano, Isidro, Zhou, Daniel Cui, Liang, Wen-Wei, Hess, Julian M., Yellapantula, Venkata D., Tamborero, David, Gonzalez-Perez, Abel, Suphavilai, Chayaporn, Ko, Jia Yu, Khurana, Ekta, Park, Peter J., Van Allen, Eliezer M., Liang, Han, Lawrence, Michael S., Godzik, Adam, Lopez-Bigas, Nuria, Stuart, Josh, Wheeler, David, Getz, Gad, Chen, Ken, Lazar, Alexander J., Mills, Gordon B., Karchin, Rachel, Ding, Li
Publicado 2018