Allosteric Signaling in PDZ Energetic Networks: Embedding Error Analysis

por Cowan, Benjamin S., Beveridge, David L., Thayer, Kelly M.
Publicado 2023

High Energy Channeling and Malleable Transition States: Molecular Dynamics Simulations and Free Energy Landscapes for the Thermal Unfolding of Protein U1A and 13 Mutants

por Dang, Na Le, Baranger, Anne M., Beveridge, David L.
Publicado 2022

Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein

por Lakhani, Bharat, Thayer, Kelly M., Hingorani, Manju M., Beveridge, David L.
Publicado 2017

Estradiol induces allosteric coupling and partitioning of sex-hormone-binding globulin monomers among conformational states

por Jasuja, Ravi, Spencer, Daniel, Jayaraj, Abhilash, Peng, Liming, Krishna, Meenakshi, Lawney, Brian, Patel, Priyank, Jayaram, Bhyravabhotla, Thayer, Kelly M., Beveridge, David L., Bhasin, Shalender
Publicado 2021

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA

por Lavery, Richard, Zakrzewska, Krystyna, Beveridge, David, Bishop, Thomas C., Case, David A., Cheatham, Thomas, Dixit, Surjit, Jayaram, B., Lankas, Filip, Laughton, Charles, Maddocks, John H., Michon, Alexis, Osman, Roman, Orozco, Modesto, Perez, Alberto, Singh, Tanya, Spackova, Nada, Sponer, Jiri
Publicado 2010

μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA

por Pasi, Marco, Maddocks, John H., Beveridge, David, Bishop, Thomas C., Case, David A., Cheatham, Thomas, Dans, Pablo D., Jayaram, B., Lankas, Filip, Laughton, Charles, Mitchell, Jonathan, Osman, Roman, Orozco, Modesto, Pérez, Alberto, Petkevičiūtė, Daiva, Spackova, Nada, Sponer, Jiri, Zakrzewska, Krystyna, Lavery, Richard
Publicado 2014