The wonder of RNA: a personal reflection of the last 20 years

por Bevilacqua, Philip C.
Publicado 2015

Rock, scissors, paper: How RNA structure informs function

por Assmann, Sarah M, Chou, Hong-Li, Bevilacqua, Philip C
Publicado 2023

Molecular Dynamics Study of Twister Ribozyme: Role of Mg(2+) Ions and the Hydrogen-Bonding Network in the Active Site

por Ucisik, Melek N., Bevilacqua, Philip C., Hammes-Schiffer, Sharon
Publicado 2016

Inverse Thio Effects in the Hepatitis Delta Virus Ribozyme Reveal that the Reaction Pathway Is Controlled by Metal Ion Charge Density

por Thaplyal, Pallavi, Ganguly, Abir, Hammes-Schiffer, Sharon, Bevilacqua, Philip C.
Publicado 2015

Design of highly active double-pseudoknotted ribozymes: a combined computational and experimental study

por Yamagami, Ryota, Kayedkhordeh, Mohammad, Mathews, David H, Bevilacqua, Philip C
Publicado 2019

Modeling RNA secondary structure folding ensembles using SHAPE mapping data

por Spasic, Aleksandar, Assmann, Sarah M, Bevilacqua, Philip C, Mathews, David H
Publicado 2018

Cellular conditions of weakly chelated magnesium ions strongly promote RNA stability and catalysis

por Yamagami, Ryota, Bingaman, Jamie L., Frankel, Erica A., Bevilacqua, Philip C.
Publicado 2018

Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress

por Yamagami, Ryota, Sieg, Jacob P., Assmann, Sarah M., Bevilacqua, Philip C.
Publicado 2022

Molecular crowders and cosolutes promote folding cooperativity of RNA under physiological ionic conditions

por Strulson, Christopher A., Boyer, Joshua A., Whitman, Elisabeth E., Bevilacqua, Philip C.
Publicado 2014

Quantum Mechanical/Molecular Mechanical Free Energy Simulations of the Self-Cleavage Reaction in the Hepatitis Delta Virus Ribozyme

por Ganguly, Abir, Thaplyal, Pallavi, Rosta, Edina, Bevilacqua, Philip C., Hammes-Schiffer, Sharon
Publicado 2014

RNA multimerization as an organizing force for liquid–liquid phase separation

por Bevilacqua, Philip C., Williams, Allison M., Chou, Hong-Li, Assmann, Sarah M.
Publicado 2022

Tissue-specific changes in the RNA structurome mediate salinity response in Arabidopsis

por Tack, David C., Su, Zhao, Yu, Yunqing, Bevilacqua, Philip C., Assmann, Sarah M.
Publicado 2020

Biological solution conditions and flanking sequence modulate LLPS of RNA G-quadruplex structures

por Williams, Allison M., Dickson, Taylor M., Lagoa-Miguel, Claudia A., Bevilacqua, Philip C.
Publicado 2022

RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life

por Meyer, McCauley O., Yamagami, Ryota, Choi, Saehyun, Keating, Christine D., Bevilacqua, Philip C.
Publicado 2023

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells

por Sieg, Jacob P, Jolley, Elizabeth A, Huot, Melanie J, Babitzke, Paul, Bevilacqua, Philip C
Publicado 2023

RNA sequence and structure control assembly and function of RNA condensates

por Poudyal, Raghav R., Sieg, Jacob P., Portz, Bede, Keating, Christine D., Bevilacqua, Philip C.
Publicado 2021

Role of the Active Site Guanine in the glmS Ribozyme Self-Cleavage Mechanism: Quantum Mechanical/Molecular Mechanical Free Energy Simulations

por Zhang, Sixue, Ganguly, Abir, Goyal, Puja, Bingaman, Jamie L., Bevilacqua, Philip C., Hammes-Schiffer, Sharon
Publicado 2014

Glyoxals as in vivo RNA structural probes of guanine base-pairing

por Mitchell, David, Ritchey, Laura E., Park, Hongmarn, Babitzke, Paul, Assmann, Sarah M., Bevilacqua, Philip C.
Publicado 2018

Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments

por Cakmak, Fatma Pir, Choi, Saehyun, Meyer, McCauley O., Bevilacqua, Philip C., Keating, Christine D.
Publicado 2020

RNA G-Quadruplexes in the model plant species Arabidopsis thaliana: prevalence and possible functional roles

por Mullen, Melissa A., Olson, Kalee J., Dallaire, Paul, Major, François, Assmann, Sarah M., Bevilacqua, Philip C.
Publicado 2010