Deep self-supervised learning for biosynthetic gene cluster detection and product classification

por Rios-Martinez, Carolina, Bhattacharya, Nicholas, Amini, Ava P., Crawford, Lorin, Yang, Kevin K.
Publicado 2023

Differences in the path to exit the ribosome across the three domains of life

por Dao Duc, Khanh, Batra, Sanjit S, Bhattacharya, Nicholas, Cate, Jamie H D, Song, Yun S
Publicado 2019

Transporter genes in biosynthetic gene clusters predict metabolite characteristics and siderophore activity

por Crits-Christoph, Alexander, Bhattacharya, Nicholas, Olm, Matthew R., Song, Yun S., Banfield, Jillian F.
Publicado 2021

Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

por Bhattacharya, Nicholas, Thomas, Neil, Rao, Roshan, Dauparas, Justas, Koo, Peter K., Baker, David, Song, Yun S., Ovchinnikov, Sergey
Publicado 2022

End-to-end learning of multiple sequence alignments with differentiable Smith–Waterman

por Petti, Samantha, Bhattacharya, Nicholas, Rao, Roshan, Dauparas, Justas, Thomas, Neil, Zhou, Juannan, Rush, Alexander M, Koo, Peter, Ovchinnikov, Sergey
Publicado 2022

Randomized gates eliminate bias in sort‐seq assays

por Trippe, Brian L., Huang, Buwei, DeBenedictis, Erika A., Coventry, Brian, Bhattacharya, Nicholas, Yang, Kevin K., Baker, David, Crawford, Lorin
Publicado 2022

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria

por Olm, Matthew R., Bhattacharya, Nicholas, Crits-Christoph, Alexander, Firek, Brian A., Baker, Robyn, Song, Yun S., Morowitz, Michael J., Banfield, Jillian F.
Publicado 2019