Scaling cross-tissue single-cell annotation models

por Fischer, Felix, Fischer, David S., Biederstedt, Evan, Villani, Alexandra-Chloé, Theis, Fabian J.
Publicado 2023

Gene panel selection for targeted spatial transcriptomics

por Zhang, Yida, Petukhov, Viktor, Biederstedt, Evan, Que, Richard, Zhang, Kun, Kharchenko, Peter V.
Publicado 2023

NovoGraph: Human genome graph construction from multiple long-read de novo assemblies

por Biederstedt, Evan, Oliver, Jeffrey C., Hansen, Nancy F., Jajoo, Aarti, Dunn, Nathan, Olson, Andrew, Busby, Ben, Dilthey, Alexander T.
Publicado 2018

Phase and context shape the function of composite oncogenic mutations

por Gorelick, Alexander N., Sánchez-Rivera, Francisco J., Cai, Yanyan, Bielski, Craig M., Biederstedt, Evan, Jonsson, Philip, Richards, Allison L., Vasan, Neil, Penson, Alexander V., Friedman, Noah D., Ho, Yu-Jui, Baslan, Timour, Bandlamudi, Chaitanya, Scaltriti, Maurizio, Schultz, Nikolaus, Lowe, Scott W., Reznik, Ed, Taylor, Barry S.
Publicado 2020

Epigenetic evolution and lineage histories of chronic lymphocytic leukemia

por Gaiti, Federico, Chaligne, Ronan, Gu, Hongcang, Brand, Ryan Matthew, Kothen-Hill, Steven, Schulman, Rafael, Grigorev, Kirill, Risso, Davide, Kim, Kyu-Tae, Pastore, Alessandro, Huang, Kevin Y., Alonso, Alicia, Sheridan, Caroline, Omans, Nathaniel D., Biederstedt, Evan, Clement, Kendell, Wang, Lili, Felsenfeld, Joshua A., Bhavsar, Erica B., Aryee, Martin J., Allan, John N., Furman, Richard, Gnirke, Andreas, Wu, Catherine J., Meissner, Alexander, Landau, Dan A.
Publicado 2019

NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index

por Martí-Carreras, Joan, Gener, Alejandro Rafael, Miller, Sierra D., Brito, Anderson F., Camacho, Christiam E., Connor, Ryan, Deboutte, Ward, Glickman, Cody, Kristensen, David M., Meyer, Wynn K., Modha, Sejal, Norris, Alexis L., Saha, Surya, Belford, Anna K., Biederstedt, Evan, Brister, James Rodney, Buchmann, Jan P., Cooley, Nicholas P., Edwards, Robert A., Javkar, Kiran, Muchow, Michael, Muralidharan, Harihara Subrahmaniam, Pepe-Ranney, Charles, Shah, Nidhi, Shakya, Migun, Tisza, Michael J., Tully, Benjamin J., Vanmechelen, Bert, Virta, Valerie C., Weissman, JL, Zalunin, Vadim, Efremov, Alexandre, Busby, Ben
Publicado 2020

A strategy for building and using a human reference pangenome

por Llamas, Bastien, Narzisi, Giuseppe, Schneider, Valerie, Audano, Peter A., Biederstedt, Evan, Blauvelt, Lon, Bradbury, Peter, Chang, Xian, Chin, Chen-Shan, Fungtammasan, Arkarachai, Clarke, Wayne E., Cleary, Alan, Ebler, Jana, Eizenga, Jordan, Sibbesen, Jonas A., Markello, Charles J., Garrison, Erik, Garg, Shilpa, Hickey, Glenn, Lazo, Gerard R., Lin, Michael F., Mahmoud, Medhat, Marschall, Tobias, Minkin, Ilia, Monlong, Jean, Musunuri, Rajeeva L., Sagayaradj, Sagayamary, Novak, Adam M., Rautiainen, Mikko, Regier, Allison, Sedlazeck, Fritz J., Siren, Jouni, Souilmi, Yassine, Wagner, Justin, Wrightsman, Travis, Yokoyama, Toshiyuki T., Zeng, Qiandong, Zook, Justin M., Paten, Benedict, Busby, Ben
Publicado 2021

An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates

por Mc Cartney, Ann M., Mahmoud, Medhat, Jochum, Michael, Agustinho, Daniel Paiva, Zorman, Barry, Al Khleifat, Ahmad, Dabbaghie, Fawaz, K Kesharwani, Rupesh, Smolka, Moritz, Dawood, Moez, Albin, Dreycey, Aliyev, Elbay, Almabrazi, Hakeem, Arslan, Ahmed, Balaji, Advait, Behera, Sairam, Billingsley, Kimberley, L Cameron, Daniel, Daw, Joyjit, T. Dawson, Eric, De Coster, Wouter, Du, Haowei, Dunn, Christopher, Esteban, Rocio, Jolly, Angad, Kalra, Divya, Liao, Chunxiao, Liu, Yunxi, Lu, Tsung-Yu, M Havrilla, James, M Khayat, Michael, Marin, Maximillian, Monlong, Jean, Price, Stephen, Rafael Gener, Alejandro, Ren, Jingwen, Sagayaradj, Sagayamary, Sapoval, Nicolae, Sinner, Claude, C. Soto, Daniela, Soylev, Arda, Subramaniyan, Arun, Syed, Najeeb, Tadimeti, Neha, Tater, Pamella, Vats, Pankaj, Vaughn, Justin, Walker, Kimberly, Wang, Gaojianyong, Zeng, Qiandong, Zhang, Shangzhe, Zhao, Tingting, Kille, Bryce, Biederstedt, Evan, Chaisson, Mark, English, Adam, Kronenberg, Zev, J. Treangen, Todd, Hefferon, Timothy, Chin, Chen-Shan, Busby, Ben, J Sedlazeck, Fritz
Publicado 2021