Bubble Relaxation Dynamics in Homopolymer DNA Sequences

por Hillebrand, Malcolm, Kalosakas, George, Bishop, Alan R., Skokos, Charalampos
Publicado 2023

The role of structural parameters in DNA cyclization

por Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Alexandrov, Boian S.
Publicado 2016

Evaluating the role of coherent delocalized phonon-like modes in DNA cyclization

por Alexandrov, Ludmil B., Rasmussen, Kim Ø., Bishop, Alan R., Alexandrov, Boian S.
Publicado 2017

Understanding HPC Benchmark Performance on Intel Broadwell and Cascade Lake Processors

por Alappat, Christie L., Hofmann, Johannes, Hager, Georg, Fehske, Holger, Bishop, Alan R., Wellein, Gerhard
Publicado 2020

Toward a Detailed Description of the Thermally Induced Dynamics of the Core Promoter

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

Examining DNA Breathing with pyDNA-EPBD

por Kabir, Anowarul, Bhattarai, Manish, Rasmussen, Kim Ø., Shehu, Amarda, Usheva, Anny, Bishop, Alan R, Alexandrov, Boian S
Publicado 2023

A nonlinear dynamic model of DNA with a sequence-dependent stacking term

por Alexandrov, Boian S., Gelev, Vladimir, Monisova, Yevgeniya, Alexandrov, Ludmil B., Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2009

DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells

por Alexandrov, Boian S., Fukuyo, Yayoi, Lange, Martin, Horikoshi, Nobuo, Gelev, Vladimir, Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2012

DNA dynamics play a role as a basal transcription factor in the positioning and regulation of gene transcription initiation

por Alexandrov, Boian S., Gelev, Vladimir, Yoo, Sang Wook, Alexandrov, Ludmil B., Fukuyo, Yayoi, Bishop, Alan R., Rasmussen, Kim Ø., Usheva, Anny
Publicado 2010

Metabolomics and the pig model reveal aberrant cardiac energy metabolism in metabolic syndrome

por Karimi, Maryam, Petkova, Victoria, Asara, John M., Griffin, Michael J., Sellke, Frank W., Bishop, Alan R., Alexandrov, Boian S., Usheva, Anny
Publicado 2020

DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

Correction: DNA Dynamics Is Likely to Be a Factor in the Genomic Nucleotide Repeats Expansions Related to Diseases

por Alexandrov, Boian S., Valtchinov, Vlad I., Alexandrov, Ludmil B., Gelev, Vladimir, Dagon, Yossi, Bock, Jonathan, Kohane, Isaac S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny
Publicado 2011

Binding of Nucleoid-Associated Protein Fis to DNA Is Regulated by DNA Breathing Dynamics

por Nowak-Lovato, Kristy, Alexandrov, Ludmil B., Banisadr, Afsheen, Bauer, Amy L., Bishop, Alan R., Usheva, Anny, Mu, Fangping, Hong-Geller, Elizabeth, Rasmussen, Kim Ø., Hlavacek, William S., Alexandrov, Boian S.
Publicado 2013

Mammalian Stem Cells Reprogramming in Response to Terahertz Radiation

por Bock, Jonathan, Fukuyo, Yayoi, Kang, Sona, Phipps, M. Lisa, Alexandrov, Ludmil B., Rasmussen, Kim Ø., Bishop, Alan R., Rosen, Evan D., Martinez, Jennifer S., Chen, Hou-Tong, Rodriguez, George, Alexandrov, Boian S., Usheva, Anny
Publicado 2010

Non-thermal effects of terahertz radiation on gene expression in mouse stem cells

por Alexandrov, Boian S., Rasmussen, Kim Ø., Bishop, Alan R., Usheva, Anny, Alexandrov, Ludmil B., Chong, Shou, Dagon, Yossi, Booshehri, Layla G., Mielke, Charles H., Phipps, M. Lisa, Martinez, Jennifer S., Chen, Hou-Tong, Rodriguez, George
Publicado 2011

Specificity and Heterogeneity of Terahertz Radiation Effect on Gene Expression in Mouse Mesenchymal Stem Cells

por Alexandrov, Boian S., Phipps, M. Lisa, Alexandrov, Ludmil B., Booshehri, Layla G., Erat, Anna, Zabolotny, Janice, Mielke, Charles H., Chen, Hou-Tong, Rodriguez, George, Rasmussen, Kim Ø., Martinez, Jennifer S., Bishop, Alan R., Usheva, Anny
Publicado 2013

Possible Demonstration of a Polaronic Bose-Einstein(-Mott) Condensate in UO(2(+x)) by Ultrafast THz Spectroscopy and Microwave Dissipation

por Conradson, Steven D., Gilbertson, Steven M., Daifuku, Stephanie L., Kehl, Jeffrey A., Durakiewicz, Tomasz, Andersson, David A., Bishop, Alan R., Byler, Darrin D., Maldonado, Pablo, Oppeneer, Peter M., Valdez, James A., Neidig, Michael L., Rodriguez, George
Publicado 2015