Development of a high throughput assay for indirectly measuring phage growth using the OmniLog(TM) system

por Henry, Matthew, Biswas, Biswajit, Vincent, Leah, Mokashi, Vishwesh, Schuch, Raymond, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga
Publicado 2012

Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples

por Paskey, Adrian C., Frey, Kenneth G., Schroth, Gary, Gross, Stephen, Hamilton, Theron, Bishop-Lilly, Kimberly A.
Publicado 2019

Diversity, Transmission, and Cophylogeny of Ledanteviruses (Rhabdoviridae: Ledantevirus) and Nycteribiid Bat Flies Parasitizing Angolan Soft-Furred Fruit Bats in Bundibugyo Distric...

por Bennett, Andrew J., Paskey, Adrian C., Kuhn, Jens H., Bishop-Lilly, Kimberly A., Goldberg, Tony L.
Publicado 2020

miRNA Temporal Analyzer (mirnaTA): a bioinformatics tool for identifying differentially expressed microRNAs in temporal studies using normal quantile transformation

por Cer, Regina Z, Herrera-Galeano, J Enrique, Anderson, Joseph J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Publicado 2014

Bioinformatic Characterization of Mosquito Viromes within the Eastern United States and Puerto Rico: Discovery of Novel Viruses

por Frey, Kenneth G., Biser, Tara, Hamilton, Theron, Santos, Carlos J., Pimentel, Guillermo, Mokashi, Vishwesh P., Bishop-Lilly, Kimberly A.
Publicado 2016

BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results

por Herrera-Galeano, Jesus Enrique, Frey, Kenneth G, Cer, Regina Z, Mateczun, Alfred J, Bishop-Lilly, Kimberly A, Mokashi, Vishwesh P
Publicado 2014

A Yersinia pestis-specific, lytic phage preparation significantly reduces viable Y. pestis on various hard surfaces experimentally contaminated with the bacterium

por Rashid, Mohammed H., Revazishvili, Tamara, Dean, Timothy, Butani, Amy, Verratti, Kathleen, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga, Sulakvelidze, Alexander, Rajanna, Chythanya
Publicado 2012

Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes

por Lueder, Matthew R., Cer, Regina Z., Patrick, Miles, Voegtly, Logan J., Long, Kyle A., Rice, Gregory K., Bishop-Lilly, Kimberly A.
Publicado 2021

High-Quality Draft Genome Sequence of Pseudomonas aeruginosa 268 Isolated from a Patient with a Left Ventricular Assist Device

por Voegtly, Logan J., Rice, Gregory K., Cer, Regina Z., Frey, Kenneth G., Biswas, Biswajit, Hamilton, Theron, Aslam, Saima, Bishop-Lilly, Kimberly A.
Publicado 2019

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

por Chang, Wenling E, Sarver, Keri, Higgs, Brandon W, Read, Timothy D, Nolan, Nichole ME, Chapman, Carol E, Bishop-Lilly, Kimberly A, Sozhamannan, Shanmuga
Publicado 2011

Genome Sequencing of 15 Clinical Vibrio Isolates, Including 13 Non-O1/Non-O139 Serogroup Strains

por Bishop-Lilly, Kimberly A., Johnson, Shannon L., Verratti, Kathleen, Luu, Truong, Khiani, Amy, Awosika, Joy, Mokashi, Vishwesh P., Chain, Patrick S. G., Sozhamannan, Shanmuga
Publicado 2014

Finishing genomes with limited resources: lessons from an ensemble of microbial genomes

por Nagarajan, Niranjan, Cook, Christopher, Di Bonaventura, MariaPia, Ge, Hong, Richards, Allen, Bishop-Lilly, Kimberly A, DeSalle, Robert, Read, Timothy D, Pop, Mihai
Publicado 2010

Genome Sequencing of Four Strains of Rickettsia prowazekii, the Causative Agent of Epidemic Typhus, Including One Flying Squirrel Isolate

por Bishop-Lilly, Kimberly A., Ge, Hong, Butani, Amy, Osborne, Brian, Verratti, Kathleen, Mokashi, Vishwesh, Nagarajan, Niranjan, Pop, Mihai, Read, Timothy D., Richards, Allen L.
Publicado 2013

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood

por Frey, Kenneth G, Herrera-Galeano, Jesus Enrique, Redden, Cassie L, Luu, Truong V, Servetas, Stephanie L, Mateczun, Alfred J, Mokashi, Vishwesh P, Bishop-Lilly, Kimberly A
Publicado 2014

Full-Genome Sequence of Human Betacoronavirus 2c Jordan-N3/2012 after Serial Passage in Mammalian Cells

por Frey, Kenneth G., Redden, Cassie L., Bishop-Lilly, Kimberly A., Johnson, Reed, Hensley, Lisa E., Raviprakash, Kanakatte, Luke, Thomas, Kochel, Tad, Mokashi, Vishwesh P., Defang, Gabriel N.
Publicado 2014

Microbial Dysbiosis During Simian Immunodeficiency Virus Infection is Partially Reverted with Combination Anti-retroviral Therapy

por Blum, Faith C., Hardy, Britney L., Bishop-Lilly, Kimberly A., Frey, Kenneth G., Hamilton, Theron, Whitney, James B., Lewis, Mark G., Merrell, D. Scott, Mattapallil, Joseph J.
Publicado 2020

Characterization of pPCP1 Plasmids in Yersinia pestis Strains Isolated from the Former Soviet Union

por Rajanna, Chythanya, Revazishvili, Tamara, Rashid, Mohammed H., Chubinidze, Svetlana, Bakanidze, Lela, Tsanava, Shota, Imnadze, Paata, Bishop-Lilly, Kimberly A., Sozhamannan, Shanmuga, Gibbons, Henry S., Morris, J. Glenn, Sulakvelidze, Alexander
Publicado 2010

Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform

por Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J., Davenport, Karen W., Bishop-Lilly, Kimberly A., Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P., Chain, Patrick S.G.
Publicado 2017

Differential MicroRNA Analyses of Burkholderia pseudomallei- and Francisella tularensis-Exposed hPBMCs Reveal Potential Biomarkers

por Cer, Regina Z., Herrera-Galeano, J. Enrique, Frey, Kenneth G., Schully, Kevin L., Luu, Truong V., Pesce, John, Mokashi, Vishwesh P., Keane-Myers, Andrea M., Bishop-Lilly, Kimberly A.
Publicado 2017

Characterizing Phage Genomes for Therapeutic Applications

por Philipson, Casandra W., Voegtly, Logan J., Lueder, Matthew R., Long, Kyle A., Rice, Gregory K., Frey, Kenneth G., Biswas, Biswajit, Cer, Regina Z., Hamilton, Theron, Bishop-Lilly, Kimberly A.
Publicado 2018