alona: a web server for single-cell RNA-seq analysis

por Franzén, Oscar, Björkegren, Johan L M
Publicado 2020

Model-based clustering of multi-tissue gene expression data

por Erola, Pau, Björkegren, Johan L M, Michoel, Tom
Publicado 2020

PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data

por Franzén, Oscar, Gan, Li-Ming, Björkegren, Johan L M
Publicado 2019

Identifying shared transcriptional risk patterns between atherosclerosis and cancer

por Baylis, Richard A., Gao, Hua, Wang, Fudi, Bell, Caitlin F., Luo, Lingfeng, Björkegren, Johan L.M., Leeper, Nicholas J.
Publicado 2023

Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine

por Johnson, Kipp W., Shameer, Khader, Glicksberg, Benjamin S., Readhead, Ben, Sengupta, Partho P., Björkegren, Johan L.M., Kovacic, Jason C., Dudley, Joel T.
Publicado 2017

Plasma cortisol-linked gene networks in hepatic and adipose tissues implicate corticosteroid-binding globulin in modulating tissue glucocorticoid action and cardiovascular risk

por Bankier, Sean, Wang, Lingfei, Crawford, Andrew, Morgan, Ruth A., Ruusalepp, Arno, Andrew, Ruth, Björkegren, Johan L. M., Walker, Brian R., Michoel, Tom
Publicado 2023

Preservation Analysis of Macrophage Gene Coexpression Between Human and Mouse Identifies PARK2 as a Genetically Controlled Master Regulator of Oxidative Phosphorylation in Humans

por Codoni, Veronica, Blum, Yuna, Civelek, Mete, Proust, Carole, Franzén, Oscar, Björkegren, Johan L. M., Le Goff, Wilfried, Cambien, Francois, Lusis, Aldons J., Trégouët, David-Alexandre
Publicado 2016

EnsembleCNV: an ensemble machine learning algorithm to identify and genotype copy number variation using SNP array data

por Zhang, Zhongyang, Cheng, Haoxiang, Hong, Xiumei, Di Narzo, Antonio F, Franzen, Oscar, Peng, Shouneng, Ruusalepp, Arno, Kovacic, Jason C, Bjorkegren, Johan L M, Wang, Xiaobin, Hao, Ke
Publicado 2019

Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits

por Zhang, Wen, Voloudakis, Georgios, Rajagopal, Veera M., Readhead, Ben, Dudley, Joel T., Schadt, Eric E., Björkegren, Johan L. M., Kim, Yungil, Fullard, John F., Hoffman, Gabriel E., Roussos, Panos
Publicado 2019

Global analysis of A-to-I RNA editing reveals association with common disease variants

por Franzén, Oscar, Ermel, Raili, Sukhavasi, Katyayani, Jain, Rajeev, Jain, Anamika, Betsholtz, Christer, Giannarelli, Chiara, Kovacic, Jason C., Ruusalepp, Arno, Skogsberg, Josefin, Hao, Ke, Schadt, Eric E., Björkegren, Johan L.M.
Publicado 2018

Genetic regulation of the placental transcriptome underlies birth weight and risk of childhood obesity

por Peng, Shouneng, Deyssenroth, Maya A., Di Narzo, Antonio F., Cheng, Haoxiang, Zhang, Zhongyang, Lambertini, Luca, Ruusalepp, Arno, Kovacic, Jason C., Bjorkegren, Johan L. M., Marsit, Carmen J., Chen, Jia, Hao, Ke
Publicado 2018

OR09-04 Common Genetic Variants Associated with SERPINA6 Expression in Liver Influence Cortisol-Responsive Transcriptional Networks in Human Adipose Tissue

por Bankier, Sean A, Crawford, Andrew A, Wang, Lingfei, Sukhavasi, Katyayani, Ermel, Raili, Andrew, Ruth, Ruusalepp, Arno, Timpson, Nicolas J, Smith, George Davey, Bjorkegren, Johan L M, Walker, Brian R, Michoel, Tom
Publicado 2020

Sex differences in human adipose tissue gene expression and genetic regulation involve adipogenesis

por Anderson, Warren D., Soh, Joon Yuhl, Innis, Sarah E., Dimanche, Alexis, Ma, Lijiang, Langefeld, Carl D., Comeau, Mary E., Das, Swapan K., Schadt, Eric E., Björkegren, Johan L.M., Civelek, Mete
Publicado 2020

Plasma Cholesterol–Induced Lesion Networks Activated before Regression of Early, Mature, and Advanced Atherosclerosis

por Björkegren, Johan L. M., Hägg, Sara, Talukdar, Husain A., Foroughi Asl, Hassan, Jain, Rajeev K., Cedergren, Cecilia, Shang, Ming-Mei, Rossignoli, Aránzazu, Takolander, Rabbe, Melander, Olle, Hamsten, Anders, Michoel, Tom, Skogsberg, Josefin
Publicado 2014

Systematic analysis of chromatin interactions at disease associated loci links novel candidate genes to inflammatory bowel disease

por Meddens, Claartje A., Harakalova, Magdalena, van den Dungen, Noortje A. M., Foroughi Asl, Hassan, Hijma, Hemme J., Cuppen, Edwin P. J. G., Björkegren, Johan L. M., Asselbergs, Folkert W., Nieuwenhuis, Edward E. S., Mokry, Michal
Publicado 2016

Identification of the Transcription Factor ATF3 as a Direct and Indirect Regulator of the LDLR

por Bauer, Sabine, Eigenmann, Jana, Zhao, Yuqi, Fleig, Julia, Hawe, Johann S., Pan, Calvin, Bongiovanni, Dario, Wengert, Simon, Ma, Angela, Lusis, Aldons J., Kovacic, Jason C., Björkegren, Johan L. M., Maegdefessel, Lars, Schunkert, Heribert, von Scheidt, Moritz
Publicado 2022

Single-cell analysis uncovers fibroblast heterogeneity and criteria for fibroblast and mural cell identification and discrimination

por Muhl, Lars, Genové, Guillem, Leptidis, Stefanos, Liu, Jianping, He, Liqun, Mocci, Giuseppe, Sun, Ying, Gustafsson, Sonja, Buyandelger, Byambajav, Chivukula, Indira V., Segerstolpe, Åsa, Raschperger, Elisabeth, Hansson, Emil M., Björkegren, Johan L. M., Peng, Xiao-Rong, Vanlandewijck, Michael, Lendahl, Urban, Betsholtz, Christer
Publicado 2020

Publisher Correction: Single-cell analysis uncovers fibroblast heterogeneity and criteria for fibroblast and mural cell identification and discrimination

por Muhl, Lars, Genové, Guillem, Leptidis, Stefanos, Liu, Jianping, He, Liqun, Mocci, Giuseppe, Sun, Ying, Gustafsson, Sonja, Buyandelger, Byambajav, Chivukula, Indira V., Segerstolpe, Åsa, Raschperger, Elisabeth, Hansson, Emil M., Björkegren, Johan L. M., Peng, Xiao-Rong, Vanlandewijck, Michael, Lendahl, Urban, Betsholtz, Christer
Publicado 2020

Cross-Tissue Regulatory Gene Networks in Coronary Artery Disease

por Talukdar, Husain A., Asl, Hassan Foroughi, Jain, Rajeev K., Ermel, Raili, Ruusalepp, Arno, Franzén, Oscar, Kidd, Brian A., Readhead, Ben, Giannarelli, Chiara, Kovacic, Jason C., Ivert, Torbjörn, Dudley, Joel T., Civelek, Mete, Lusis, Aldons J., Schadt, Eric E., Skogsberg, Josefin, Michoel, Tom, Björkegren, Johan L.M.
Publicado 2016

Functional regulatory mechanism of smooth muscle cell-restricted LMOD1 coronary artery disease locus

por Nanda, Vivek, Wang, Ting, Pjanic, Milos, Liu, Boxiang, Nguyen, Trieu, Matic, Ljubica Perisic, Hedin, Ulf, Koplev, Simon, Ma, Lijiang, Franzén, Oscar, Ruusalepp, Arno, Schadt, Eric E., Björkegren, Johan L. M., Montgomery, Stephen B., Snyder, Michael P., Quertermous, Thomas, Leeper, Nicholas J., Miller, Clint L.
Publicado 2018