P4P: a peptidome-based strain-level genome comparison web tool

por Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Lourenço, Anália, Sánchez, Borja
Publicado 2017

BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

por Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Sánchez, Borja, Lourenço, Anália
Publicado 2018

Microbiota-Derived β-Amyloid-like Peptides Trigger Alzheimer’s Disease-Related Pathways in the SH-SY5Y Neural Cell Line

por Blanco-Míguez, Aitor, Tamés, Hector, Ruas-Madiedo, Patricia, Sánchez, Borja
Publicado 2021

Precision modification of the human gut microbiota targeting surface-associated proteins

por Marcos-Fernández, Raquel, Ruiz, Lorena, Blanco-Míguez, Aitor, Margolles, Abelardo, Sánchez, Borja
Publicado 2021

MAHMI database: a comprehensive MetaHit-based resource for the study of the mechanism of action of the human microbiota

por Blanco-Míguez, Aitor, Gutiérrez-Jácome, Alberto, Fdez-Riverola, Florentino, Lourenço, Anália, Sánchez, Borja
Publicado 2017

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

por Pérez-Pérez, Martin, Pérez-Rodríguez, Gael, Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Valencia, Alfonso, Krallinger, Martin, Lourenço, Anália
Publicado 2019

Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

por Blanco-Míguez, Aitor, Meier-Kolthoff, Jan P., Gutiérrez-Jácome, Alberto, Göker, Markus, Fdez-Riverola, Florentino, Sánchez, Borja, Lourenço, Anália
Publicado 2016

Targeted depletion of pks+ bacteria from a fecal microbiota using specific antibodies

por Blanco-Míguez, Aitor, Marcos-Fernández, Raquel, Guadamuro-García, Lucía, Fdez-Riverola, Florentino, Cubiella, Joaquín, Lourenço, Anália, Margolles, Abelardo, Sánchez, Borja
Publicado 2023

In Silico Screening of the Human Gut Metaproteome Identifies Th17-Promoting Peptides Encrypted in Proteins of Commensal Bacteria

por Hidalgo-Cantabrana, Claudio, Moro-García, Marco A., Blanco-Míguez, Aitor, Fdez-Riverola, Florentino, Lourenço, Anália, Alonso-Arias, Rebeca, Sánchez, Borja
Publicado 2017

Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data

por Ciciani, Matteo, Demozzi, Michele, Pedrazzoli, Eleonora, Visentin, Elisabetta, Pezzè, Laura, Signorini, Lorenzo Federico, Blanco-Miguez, Aitor, Zolfo, Moreno, Asnicar, Francesco, Casini, Antonio, Cereseto, Anna, Segata, Nicola
Publicado 2022

Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines

por Tomasi, Michele, Dalsass, Mattia, Beghini, Francesco, Zanella, Ilaria, Caproni, Elena, Fantappiè, Laura, Gagliardi, Assunta, Irene, Carmela, König, Enrico, Frattini, Luca, Masetti, Giulia, Isaac, Samine Jessica, Armanini, Federica, Cumbo, Fabio, Blanco-Míguez, Aitor, Grandi, Alberto, Segata, Nicola, Grandi, Guido
Publicado 2021

Faecal microbiota transplantation for the treatment of diarrhoea induced by tyrosine-kinase inhibitors in patients with metastatic renal cell carcinoma

por Ianiro, Gianluca, Rossi, Ernesto, Thomas, Andrew M., Schinzari, Giovanni, Masucci, Luca, Quaranta, Gianluca, Settanni, Carlo Romano, Lopetuso, Loris Riccardo, Armanini, Federica, Blanco-Miguez, Aitor, Asnicar, Francesco, Consolandi, Clarissa, Iacovelli, Roberto, Sanguinetti, Maurizio, Tortora, Giampaolo, Gasbarrini, Antonio, Segata, Nicola, Cammarota, Giovanni
Publicado 2020

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

por Beghini, Francesco, McIver, Lauren J, Blanco-Míguez, Aitor, Dubois, Leonard, Asnicar, Francesco, Maharjan, Sagun, Mailyan, Ana, Manghi, Paolo, Scholz, Matthias, Thomas, Andrew Maltez, Valles-Colomer, Mireia, Weingart, George, Zhang, Yancong, Zolfo, Moreno, Huttenhower, Curtis, Franzosa, Eric A, Segata, Nicola
Publicado 2021

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly

por Karcher, Nicolai, Nigro, Eleonora, Punčochář, Michal, Blanco-Míguez, Aitor, Ciciani, Matteo, Manghi, Paolo, Zolfo, Moreno, Cumbo, Fabio, Manara, Serena, Golzato, Davide, Cereseto, Anna, Arumugam, Manimozhiyan, Bui, Thi Phuong Nam, Tytgat, Hanne L. P., Valles-Colomer, Mireia, de Vos, Willem M., Segata, Nicola
Publicado 2021

Maternal and food microbial sources shape the infant microbiome of a rural Ethiopian population

por Manara, Serena, Selma-Royo, Marta, Huang, Kun D., Asnicar, Francesco, Armanini, Federica, Blanco-Miguez, Aitor, Cumbo, Fabio, Golzato, Davide, Manghi, Paolo, Pinto, Federica, Valles-Colomer, Mireia, Amoroso, Loredana, Corrias, Maria Valeria, Ponzoni, Mirco, Raffaetà, Roberta, Cabrera-Rubio, Raul, Olcina, Mari, Pasolli, Edoardo, Collado, Maria Carmen, Segata, Nicola
Publicado 2023

Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

por Maixner, Frank, Sarhan, Mohamed S., Huang, Kun D., Tett, Adrian, Schoenafinger, Alexander, Zingale, Stefania, Blanco-Míguez, Aitor, Manghi, Paolo, Cemper-Kiesslich, Jan, Rosendahl, Wilfried, Kusebauch, Ulrike, Morrone, Seamus R., Hoopmann, Michael R., Rota-Stabelli, Omar, Rattei, Thomas, Moritz, Robert L., Oeggl, Klaus, Segata, Nicola, Zink, Albert, Reschreiter, Hans, Kowarik, Kerstin
Publicado 2021

Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases

por Ianiro, Gianluca, Punčochář, Michal, Karcher, Nicolai, Porcari, Serena, Armanini, Federica, Asnicar, Francesco, Beghini, Francesco, Blanco-Míguez, Aitor, Cumbo, Fabio, Manghi, Paolo, Pinto, Federica, Masucci, Luca, Quaranta, Gianluca, De Giorgi, Silvia, Sciumè, Giusi Desirè, Bibbò, Stefano, Del Chierico, Federica, Putignani, Lorenza, Sanguinetti, Maurizio, Gasbarrini, Antonio, Valles-Colomer, Mireia, Cammarota, Giovanni, Segata, Nicola
Publicado 2022

Metabolomic and gut microbiome profiles across the spectrum of community-based COVID and non-COVID disease

por Österdahl, Marc F., Whiston, Ronan, Sudre, Carole H., Asnicar, Francesco, Cheetham, Nathan J., Blanco Miguez, Aitor, Bowyer, Vicky, Antonelli, Michela, Snell, Olivia, dos Santos Canas, Liane, Hu, Christina, Wolf, Jonathan, Menni, Cristina, Malim, Michael, Hart, Deborah, Spector, Tim, Berry, Sarah, Segata, Nicola, Doores, Katie, Ourselin, Sebastien, Duncan, Emma L., Steves, Claire J.
Publicado 2023

MetaPhlAn 4 profiling of unknown species-level genome bins improves the characterization of diet-associated microbiome changes in mice

por Manghi, Paolo, Blanco-Míguez, Aitor, Manara, Serena, NabiNejad, Amir, Cumbo, Fabio, Beghini, Francesco, Armanini, Federica, Golzato, Davide, Huang, Kun D., Thomas, Andrew M., Piccinno, Gianmarco, Punčochář, Michal, Zolfo, Moreno, Lesker, Till R., Bredon, Marius, Planchais, Julien, Glodt, Jeremy, Valles-Colomer, Mireia, Koren, Omry, Pasolli, Edoardo, Asnicar, Francesco, Strowig, Till, Sokol, Harry, Segata, Nicola
Publicado 2023

Outer Membrane Vesicles From The Gut Microbiome Contribute to Tumor Immunity by Eliciting Cross-Reactive T Cells

por Tomasi, Michele, Caproni, Elena, Benedet, Mattia, Zanella, Ilaria, Giorgetta, Sebastiano, Dalsass, Mattia, König, Enrico, Gagliardi, Assunta, Fantappiè, Laura, Berti, Alvise, Tamburini, Silvia, Croia, Lorenzo, Di Lascio, Gabriele, Bellini, Erika, Valensin, Silvia, Licata, Giada, Sebastiani, Guido, Dotta, Francesco, Armanini, Federica, Cumbo, Fabio, Asnicar, Francesco, Blanco-Míguez, Aitor, Ruggiero, Eliana, Segata, Nicola, Grandi, Guido, Grandi, Alberto
Publicado 2022