Logic modeling and the ridiculome under the rug

por Blinov, Michael L, Moraru, Ion I
Publicado 2012

ModelBricks—modules for reproducible modeling improving model annotation and provenance

por Cowan, Ann E., Mendes, Pedro, Blinov, Michael L.
Publicado 2019

The solubility product extends the buffering concept to heterotypic biomolecular condensates

por Chattaraj, Aniruddha, Blinov, Michael L, Loew, Leslie M
Publicado 2021

Molecular machines or pleiomorphic ensembles: signaling complexes revisited

por Mayer, Bruce J, Blinov, Michael L, Loew, Leslie M
Publicado 2009

MolClustPy: A Python Package to Characterize Multivalent Biomolecular Clusters

por Chattaraj, Aniruddha, Nalagandla, Indivar, Loew, Leslie M., Blinov, Michael L
Publicado 2023

MolClustPy: a Python package to characterize multivalent biomolecular clusters

por Chattaraj, Aniruddha, Nalagandla, Indivar, Loew, Leslie M, Blinov, Michael L
Publicado 2023

Dynamic model assuming mutually inhibitory biomarkers of frailty suggests bistability with contrasting mobility phenotypes

por Schaumburger, Nathan, Pally, Joel, Moraru, Ion I., Kositsawat, Jatupol, Kuchel, George A., Blinov, Michael L.
Publicado 2023

RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats

por Shaikh, Bilal, Marupilla, Gnaneswara, Wilson, Mike, Blinov, Michael L, Moraru, Ion I, Karr, Jonathan R
Publicado 2021

Systems biology graphical notation markup language (SBGNML) version 0.3

por Bergmann, Frank T., Czauderna, Tobias, Dogrusoz, Ugur, Rougny, Adrien, Dräger, Andreas, Touré, Vasundra, Mazein, Alexander, Blinov, Michael L., Luna, Augustin
Publicado 2020

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

por Rougny, Adrien, Touré, Vasundra, Albanese, John, Waltemath, Dagmar, Shirshov, Denis, Sorokin, Anatoly, Bader, Gary D, Blinov, Michael L, Mazein, Alexander
Publicado 2021

Mixed selling of different poultry species facilitates emergence of public-health-threating avian influenza viruses

por Wang, Zhen, Li, Hongkui, Li, Yuhan, Wu, Zhuanli, Ai, Hui, Zhang, Ming, Rong, Libin, Blinov, Michael L., Tong, Qi, Liu, Litao, Sun, Honglei, Pu, Juan, Feng, Wenhai, Liu, Jinhua, Sun, Yipeng
Publicado 2023

Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2

por Zhang, Fengkai, Smith, Lucian P., Blinov, Michael L., Faeder, James, Hlavacek, William S., Juan Tapia, Jose, Keating, Sarah M., Rodriguez, Nicolas, Dräger, Andreas, Harris, Leonard A., Finney, Andrew, Hu, Bin, Hucka, Michael, Meier-Schellersheim, Martin
Publicado 2020

PMAP: databases for analyzing proteolytic events and pathways

por Igarashi, Yoshinobu, Heureux, Emily, Doctor, Kutbuddin S., Talwar, Priti, Gramatikova, Svetlana, Gramatikoff, Kosi, Zhang, Ying, Blinov, Michael, Ibragimova, Salmaz S., Boyd, Sarah, Ratnikov, Boris, Cieplak, Piotr, Godzik, Adam, Smith, Jeffrey W., Osterman, Andrei L., Eroshkin, Alexey M.
Publicado 2009

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

por Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L., Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin
Publicado 2019

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)

por Waltemath, Dagmar, Golebiewski, Martin, Blinov, Michael L, Gleeson, Padraig, Hermjakob, Henning, Hucka, Michael, Inau, Esther Thea, Keating, Sarah M, König, Matthias, Krebs, Olga, Malik-Sheriff, Rahuman S, Nickerson, David, Oberortner, Ernst, Sauro, Herbert M, Schreiber, Falk, Smith, Lucian, Stefan, Melanie I, Wittig, Ulrike, Myers, Chris J
Publicado 2020

SBML Level 3: an extensible format for the exchange and reuse of biological models

por Keating, Sarah M, Waltemath, Dagmar, König, Matthias, Zhang, Fengkai, Dräger, Andreas, Chaouiya, Claudine, Bergmann, Frank T, Finney, Andrew, Gillespie, Colin S, Helikar, Tomáš, Hoops, Stefan, Malik‐Sheriff, Rahuman S, Moodie, Stuart L, Moraru, Ion I, Myers, Chris J, Naldi, Aurélien, Olivier, Brett G, Sahle, Sven, Schaff, James C, Smith, Lucian P, Swat, Maciej J, Thieffry, Denis, Watanabe, Leandro, Wilkinson, Darren J, Blinov, Michael L, Begley, Kimberly, Faeder, James R, Gómez, Harold F, Hamm, Thomas M, Inagaki, Yuichiro, Liebermeister, Wolfram, Lister, Allyson L, Lucio, Daniel, Mjolsness, Eric, Proctor, Carole J, Raman, Karthik, Rodriguez, Nicolas, Shaffer, Clifford A, Shapiro, Bruce E, Stelling, Joerg, Swainston, Neil, Tanimura, Naoki, Wagner, John, Meier‐Schellersheim, Martin, Sauro, Herbert M, Palsson, Bernhard, Bolouri, Hamid, Kitano, Hiroaki, Funahashi, Akira, Hermjakob, Henning, Doyle, John C, Hucka, Michael
Publicado 2020

BioSimulators: a central registry of simulation engines and services for recommending specific tools

por Shaikh, Bilal, Smith, Lucian P, Vasilescu, Dan, Marupilla, Gnaneswara, Wilson, Michael, Agmon, Eran, Agnew, Henry, Andrews, Steven S, Anwar, Azraf, Beber, Moritz E, Bergmann, Frank T, Brooks, David, Brusch, Lutz, Calzone, Laurence, Choi, Kiri, Cooper, Joshua, Detloff, John, Drawert, Brian, Dumontier, Michel, Ermentrout, G Bard, Faeder, James R, Freiburger, Andrew P, Fröhlich, Fabian, Funahashi, Akira, Garny, Alan, Gennari, John H, Gleeson, Padraig, Goelzer, Anne, Haiman, Zachary, Hasenauer, Jan, Hellerstein, Joseph L, Hermjakob, Henning, Hoops, Stefan, Ison, Jon C, Jahn, Diego, Jakubowski, Henry V, Jordan, Ryann, Kalaš, Matúš, König, Matthias, Liebermeister, Wolfram, Sheriff, Rahuman S Malik, Mandal, Synchon, McDougal, Robert, Medley, J Kyle, Mendes, Pedro, Müller, Robert, Myers, Chris J, Naldi, Aurelien, Nguyen, Tung V N, Nickerson, David P, Olivier, Brett G, Patoliya, Drashti, Paulevé, Loïc, Petzold, Linda R, Priya, Ankita, Rampadarath, Anand K, Rohwer, Johann M, Saglam, Ali S, Singh, Dilawar, Sinha, Ankur, Snoep, Jacky, Sorby, Hugh, Spangler, Ryan, Starruß, Jörn, Thomas, Payton J, van Niekerk, David, Weindl, Daniel, Zhang, Fengkai, Zhukova, Anna, Goldberg, Arthur P, Schaff, James C, Blinov, Michael L, Sauro, Herbert M, Moraru, Ion I, Karr, Jonathan R
Publicado 2022

BioPAX – A community standard for pathway data sharing

por Demir, Emek, Cary, Michael P., Paley, Suzanne, Fukuda, Ken, Lemer, Christian, Vastrik, Imre, Wu, Guanming, D’Eustachio, Peter, Schaefer, Carl, Luciano, Joanne, Schacherer, Frank, Martinez-Flores, Irma, Hu, Zhenjun, Jimenez-Jacinto, Veronica, Joshi-Tope, Geeta, Kandasamy, Kumaran, Lopez-Fuentes, Alejandra C., Mi, Huaiyu, Pichler, Elgar, Rodchenkov, Igor, Splendiani, Andrea, Tkachev, Sasha, Zucker, Jeremy, Gopinath, Gopal, Rajasimha, Harsha, Ramakrishnan, Ranjani, Shah, Imran, Syed, Mustafa, Anwar, Nadia, Babur, Ozgun, Blinov, Michael, Brauner, Erik, Corwin, Dan, Donaldson, Sylva, Gibbons, Frank, Goldberg, Robert, Hornbeck, Peter, Luna, Augustin, Murray-Rust, Peter, Neumann, Eric, Reubenacker, Oliver, Samwald, Matthias, van Iersel, Martijn, Wimalaratne, Sarala, Allen, Keith, Braun, Burk, Whirl-Carrillo, Michelle, Dahlquist, Kam, Finney, Andrew, Gillespie, Marc, Glass, Elizabeth, Gong, Li, Haw, Robin, Honig, Michael, Hubaut, Olivier, Kane, David, Krupa, Shiva, Kutmon, Martina, Leonard, Julie, Marks, Debbie, Merberg, David, Petri, Victoria, Pico, Alex, Ravenscroft, Dean, Ren, Liya, Shah, Nigam, Sunshine, Margot, Tang, Rebecca, Whaley, Ryan, Letovksy, Stan, Buetow, Kenneth H., Rzhetsky, Andrey, Schachter, Vincent, Sobral, Bruno S., Dogrusoz, Ugur, McWeeney, Shannon, Aladjem, Mirit, Birney, Ewan, Collado-Vides, Julio, Goto, Susumu, Hucka, Michael, Le Novère, Nicolas, Maltsev, Natalia, Pandey, Akhilesh, Thomas, Paul, Wingender, Edgar, Karp, Peter D., Sander, Chris, Bader, Gary D.
Publicado 2010