Creating and sharing reproducible research code the workflowr way

por Blischak, John D., Carbonetto, Peter, Stephens, Matthew
Publicado 2019

A Quick Introduction to Version Control with Git and GitHub

por Blischak, John D., Davenport, Emily R., Wilson, Greg
Publicado 2016

Mycobacterial infection induces a specific human innate immune response

por Blischak, John D., Tailleux, Ludovic, Mitrano, Amy, Barreiro, Luis B., Gilad, Yoav
Publicado 2015

Patterns of Transcriptional Response to 1,25-Dihydroxyvitamin D3 and Bacterial Lipopolysaccharide in Primary Human Monocytes

por Kariuki, Silvia N., Blischak, John D., Nakagome, Shigeki, Witonsky, David B., Di Rienzo, Anna
Publicado 2016

A Methodological Assessment and Characterization of Genetically-Driven Variation in Three Human Phosphoproteomes

por Engelmann, Brett W., Hsiao, Chiaowen Joyce, Blischak, John D., Fourne, Yannick, Khan, Zia, Ford, Michael, Gilad, Yoav
Publicado 2018

Discovery and characterization of variance QTLs in human induced pluripotent stem cells

por Sarkar, Abhishek K., Tung, Po-Yuan, Blischak, John D., Burnett, Jonathan E., Li, Yang I., Stephens, Matthew, Gilad, Yoav
Publicado 2019

Batch effects and the effective design of single-cell gene expression studies

por Tung, Po-Yuan, Blischak, John D., Hsiao, Chiaowen Joyce, Knowles, David A., Burnett, Jonathan E., Pritchard, Jonathan K., Gilad, Yoav
Publicado 2017

A comparative study of endoderm differentiation in humans and chimpanzees

por Blake, Lauren E., Thomas, Samantha M., Blischak, John D., Hsiao, Chiaowen Joyce, Chavarria, Claudia, Myrthil, Marsha, Gilad, Yoav, Pavlovic, Bryan J.
Publicado 2018

Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis

por Hsiao, Chiaowen Joyce, Tung, PoYuan, Blischak, John D., Burnett, Jonathan E., Barr, Kenneth A., Dey, Kushal K., Stephens, Matthew, Gilad, Yoav
Publicado 2020

Determining the genetic basis of anthracycline-cardiotoxicity by molecular response QTL mapping in induced cardiomyocytes

por Knowles, David A, Burrows, Courtney K, Blischak, John D, Patterson, Kristen M, Serie, Daniel J, Norton, Nadine, Ober, Carole, Pritchard, Jonathan K, Gilad, Yoav
Publicado 2018

Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels

por Banovich, Nicholas E., Lan, Xun, McVicker, Graham, van de Geijn, Bryce, Degner, Jacob F., Blischak, John D., Roux, Julien, Pritchard, Jonathan K., Gilad, Yoav
Publicado 2014

Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cells

por Blischak, John D., Tailleux, Ludovic, Myrthil, Marsha, Charlois, Cécile, Bergot, Emmanuel, Dinh, Aurélien, Morizot, Gloria, Chény, Olivia, Platen, Cassandre Von, Herrmann, Jean-Louis, Brosch, Roland, Barreiro, Luis B., Gilad, Yoav
Publicado 2017