Omics Notebook: robust, reproducible and flexible automated multiomics exploratory analysis and reporting

por Blum, Benjamin C, Emili, Andrew
Publicado 2021

Intracellular Density of Wolbachia Is Mediated by Host Autophagy and the Bacterial Cytoplasmic Incompatibility Gene cifB in a Cell Type-Dependent Manner in Drosophila melanogaster

por Deehan, Mark, Lin, Weiwei, Blum, Benjamin, Emili, Andrew, Frydman, Horacio
Publicado 2021

Multiomic Metabolic Enrichment Network Analysis Reveals Metabolite–Protein Physical Interaction Subnetworks Altered in Cancer

por Blum, Benjamin C., Lin, Weiwei, Lawton, Matthew L., Liu, Qian, Kwan, Julian, Turcinovic, Isabella, Hekman, Ryan, Hu, Pingzhao, Emili, Andrew
Publicado 2021

Proteomic and phosphoproteomic profiling in heart failure with preserved ejection fraction (HFpEF)

por Valero-Muñoz, María, Saw, Eng Leng, Hekman, Ryan M., Blum, Benjamin C., Hourani, Zaynab, Granzier, Henk, Emili, Andrew, Sam, Flora
Publicado 2022

Pilot Study Showing Feasibility of Phosphoproteomic Profiling of Pathway-Level Molecular Alterations in Barrett’s Esophagus

por Moore, Jarrod, Hekman, Ryan, Blum, Benjamin C., Lawton, Matthew, Lehoux, Sylvain, Stachler, Matthew, Pleskow, Douglas, Sawhney, Mandeep S., Cummings, Richard D., Emili, Andrew, Qureshi, Alia
Publicado 2022

Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling

por Chan, Stefanie, Smith, Emma, Gao, Yuan, Kwan, Julian, Blum, Benjamin C., Tilston-Lunel, Andrew M., Turcinovic, Isabella, Varelas, Xaralabos, Cardamone, Maria Dafne, Monti, Stefano, Emili, Andrew, Perissi, Valentina
Publicado 2021

SARS-CoV-2 Disrupts Proximal Elements in the JAK-STAT Pathway

por Chen, Da-Yuan, Khan, Nazimuddin, Close, Brianna J., Goel, Raghuveera K., Blum, Benjamin, Tavares, Alexander H., Kenney, Devin, Conway, Hasahn L., Ewoldt, Jourdan K., Chitalia, Vipul C., Crossland, Nicholas A., Chen, Christopher S., Kotton, Darrell N., Baker, Susan C., Fuchs, Serge Y., Connor, John H., Douam, Florian, Emili, Andrew, Saeed, Mohsan
Publicado 2021

Patient-specific iPSCs carrying an SFTPC mutation reveal the intrinsic alveolar epithelial dysfunction at the inception of interstitial lung disease

por Alysandratos, Konstantinos-Dionysios, Russo, Scott J., Petcherski, Anton, Taddeo, Evan P., Acín-Pérez, Rebeca, Villacorta-Martin, Carlos, Jean, J.C., Mulugeta, Surafel, Rodriguez, Luis R., Blum, Benjamin C., Hekman, Ryan M., Hix, Olivia T., Minakin, Kasey, Vedaie, Marall, Kook, Seunghyi, Tilston-Lunel, Andrew M., Varelas, Xaralabos, Wambach, Jennifer A., Cole, F. Sessions, Hamvas, Aaron, Young, Lisa R., Liesa, Marc, Emili, Andrew, Guttentag, Susan H., Shirihai, Orian S., Beers, Michael F., Kotton, Darrell N.
Publicado 2021

Humanized mice reveal a macrophage-enriched gene signature defining human lung tissue protection during SARS-CoV-2 infection

por Kenney, Devin J., O’Connell, Aoife K., Turcinovic, Jacquelyn, Montanaro, Paige, Hekman, Ryan M., Tamura, Tomokazu, Berneshawi, Andrew R., Cafiero, Thomas R., Al Abdullatif, Salam, Blum, Benjamin, Goldstein, Stanley I., Heller, Brigitte L., Gertje, Hans P., Bullitt, Esther, Trachtenberg, Alexander J., Chavez, Elizabeth, Nono, Evans Tuekam, Morrison, Catherine, Tseng, Anna E., Sheikh, Amira, Kurnick, Susanna, Grosz, Kyle, Bosmann, Markus, Ericsson, Maria, Huber, Bertrand R., Saeed, Mohsan, Balazs, Alejandro B., Francis, Kevin P., Klose, Alexander, Paragas, Neal, Campbell, Joshua D., Connor, John H., Emili, Andrew, Crossland, Nicholas A., Ploss, Alexander, Douam, Florian
Publicado 2022

Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2

por Hekman, Ryan M., Hume, Adam J., Goel, Raghuveera Kumar, Abo, Kristine M., Huang, Jessie, Blum, Benjamin C., Werder, Rhiannon B., Suder, Ellen L., Paul, Indranil, Phanse, Sadhna, Youssef, Ahmed, Alysandratos, Konstantinos D., Padhorny, Dzmitry, Ojha, Sandeep, Mora-Martin, Alexandra, Kretov, Dmitry, Ash, Peter E.A., Verma, Mamta, Zhao, Jian, Patten, J.J., Villacorta-Martin, Carlos, Bolzan, Dante, Perea-Resa, Carlos, Bullitt, Esther, Hinds, Anne, Tilston-Lunel, Andrew, Varelas, Xaralabos, Farhangmehr, Shaghayegh, Braunschweig, Ulrich, Kwan, Julian H., McComb, Mark, Basu, Avik, Saeed, Mohsan, Perissi, Valentina, Burks, Eric J., Layne, Matthew D., Connor, John H., Davey, Robert, Cheng, Ji-Xin, Wolozin, Benjamin L., Blencowe, Benjamin J., Wuchty, Stefan, Lyons, Shawn M., Kozakov, Dima, Cifuentes, Daniel, Blower, Michael, Kotton, Darrell N., Wilson, Andrew A., Mühlberger, Elke, Emili, Andrew
Publicado 2020

Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2

por Hekman, Ryan M., Hume, Adam J., Goel, Raghuveera Kumar, Abo, Kristine M., Huang, Jessie, Blum, Benjamin C., Werder, Rhiannon B., Suder, Ellen L., Paul, Indranil, Phanse, Sadhna, Youssef, Ahmed, Alysandratos, Konstantinos D., Padhorny, Dzmitry, Ojha, Sandeep, Mora-Martin, Alexandra, Kretov, Dmitry, Ash, Peter E.A., Verma, Mamta, Zhao, Jian, Patten, J.J., Villacorta-Martin, Carlos, Bolzan, Dante, Perea-Resa, Carlos, Bullitt, Esther, Hinds, Anne, Tilston-Lunel, Andrew, Varelas, Xaralabos, Farhangmehr, Shaghayegh, Braunschweig, Ulrich, Kwan, Julian H., McComb, Mark, Basu, Avik, Saeed, Mohsan, Perissi, Valentina, Burks, Eric J., Layne, Matthew D., Connor, John H., Davey, Robert, Cheng, Ji-Xin, Wolozin, Benjamin L., Blencowe, Benjamin J., Wuchty, Stefan, Lyons, Shawn M., Kozakov, Dima, Cifuentes, Daniel, Blower, Michael, Kotton, Darrell N., Wilson, Andrew A., Mühlberger, Elke, Emili, Andrew
Publicado 2021