Hypercluster: a flexible tool for parallelized unsupervised clustering optimization

por Blumenberg, Lili, Ruggles, Kelly V.
Publicado 2020

Phylogenetic Analysis of Algal Symbionts Associated with Four North American Amphibian Egg Masses

por Kim, Eunsoo, Lin, Yuan, Kerney, Ryan, Blumenberg, Lili, Bishop, Cory
Publicado 2014

BlackSheep: A Bioconductor and Bioconda Package for Differential Extreme Value Analysis

por Blumenberg, Lili, Kawaler, Emily A., Cornwell, MacIntosh, Smith, Shaleigh, Ruggles, Kelly V., Fenyö, David
Publicado 2021

Impaired Expression of Rearranged Immunoglobulin Genes and Premature p53 Activation Block B Cell Development in BMI1 Null Mice

por Cantor, David J., King, Bryan, Blumenberg, Lili, DiMauro, Teresa, Aifantis, Iannis, Koralov, Sergei B., Skok, Jane A., David, Gregory
Publicado 2019

PhosphoDisco: A Toolkit for Co-regulated Phosphorylation Module Discovery in Phosphoproteomic Data

por Schraink, Tobias, Blumenberg, Lili, Hussey, Grant, George, Sabrina, Miller, Brecca, Mathew, Nithu, González-Robles, Tania J., Sviderskiy, Vladislav, Papagiannakopoulos, Thales, Possemato, Richard, Fenyö, David, Ruggles, Kelly V.
Publicado 2023

The Conserved ATM Kinase RAG2-S365 Phosphorylation Site Limits Cleavage Events in Individual Cells Independent of Any Repair Defect

por Hewitt, Susannah L., Wong, Jason B., Lee, Ji-Hoon, Nishana, Mayilaadumveettil, Chen, Hongxi, Coussens, Marc, Arnal, Suzzette M., Blumenberg, Lili M., Roth, David B., Paull, Tanya T., Skok, Jane A.
Publicado 2017

Rapid TCR:Epitope Ranker (RAPTER): a primary human T cell reactivity screening assay pairing epitope and TCR at single cell resolution

por Deering, Raquel P., Blumenberg, Lili, Li, Lianjie, Dhanik, Ankur, Jeong, Se, Pourpe, Stephane, Song, Hang, Boucher, Lauren, Ragunathan, Shoba, Li, Yanxia, Zhong, Maggie, Kuhnert, Jessica, Adler, Christina, Hawkins, Peter, Gupta, Namita T., Moore, Michael, Ni, Min, Hansen, Johanna, Wei, Yi, Thurston, Gavin
Publicado 2023

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

por Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A.
Publicado 2020